BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZF02RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1154                                                         991   0.0  

>3x_Contig1154 
          Length = 6277

 Score =  991 bits (500), Expect = 0.0
 Identities = 532/541 (98%), Gaps = 3/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 396 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 77

                                                                       
Query: 456 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 137

                                                                       
Query: 516 cgaagctacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 575
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cgaag-tacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 196

                                                                       
Query: 576 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 635
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 256

                                                                       
Query: 636 agtcaagagcaatgttttcagatatcagcccaaagaaatatgggcctatctataaacgtt 695
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agtcaagagcaatgttttcagatatcagcccaaagaaatatgggcctatctataaacgtt 316

                                                                       
Query: 696 tggttatggaagacgcacatctaaggaaaaacctaaaccttcaagatgtcattaaagtta 755
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggttatggaagacgcacatctaaggaaaaacctaaaccttcaagatgtcattaaagtta 376

                                                                       
Query: 756 tagacgctggttgggtggaaacatcaaaatgggaccgtgctgcccaaggcgctgcatgaa 815
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagacgctggttgggtggaaacatcaaaatgggaccgtgctgcccaaggcgctgcatgaa 436

                                                                       
Query: 816 aagaattaacagcgtatgcacattagcgacgctaacttaccattattagcattaacanac 875
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 437 aagaattaacagcgtatgcacattagcgacgctaacttaccattattagcaataacaaac 496

                                                                       
Query: 876 atgcctacagctttcaaactngataaaa--gatgaaatgtgttatgctactttttccttc 933
           ||||||||||||||||||   |||||||  ||||||||||||||||||||||||| ||||
Sbjct: 497 atgcctacagctttcaaaactgataaaaaggatgaaatgtgttatgctacttttttcttc 556

            
Query: 934 t 934
           |
Sbjct: 557 t 557


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5852
Number of Sequences: 1807
Number of extensions: 5852
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)