BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZF02RM1.SCF screened BAC_end (936 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1154 991 0.0 >3x_Contig1154 Length = 6277 Score = 991 bits (500), Expect = 0.0 Identities = 532/541 (98%), Gaps = 3/541 (0%) Strand = Plus / Plus Query: 396 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 77 Query: 456 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 137 Query: 516 cgaagctacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 575 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 cgaag-tacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 196 Query: 576 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 256 Query: 636 agtcaagagcaatgttttcagatatcagcccaaagaaatatgggcctatctataaacgtt 695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 agtcaagagcaatgttttcagatatcagcccaaagaaatatgggcctatctataaacgtt 316 Query: 696 tggttatggaagacgcacatctaaggaaaaacctaaaccttcaagatgtcattaaagtta 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 tggttatggaagacgcacatctaaggaaaaacctaaaccttcaagatgtcattaaagtta 376 Query: 756 tagacgctggttgggtggaaacatcaaaatgggaccgtgctgcccaaggcgctgcatgaa 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 tagacgctggttgggtggaaacatcaaaatgggaccgtgctgcccaaggcgctgcatgaa 436 Query: 816 aagaattaacagcgtatgcacattagcgacgctaacttaccattattagcattaacanac 875 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 437 aagaattaacagcgtatgcacattagcgacgctaacttaccattattagcaataacaaac 496 Query: 876 atgcctacagctttcaaactngataaaa--gatgaaatgtgttatgctactttttccttc 933 |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| Sbjct: 497 atgcctacagctttcaaaactgataaaaaggatgaaatgtgttatgctacttttttcttc 556 Query: 934 t 934 | Sbjct: 557 t 557 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5852 Number of Sequences: 1807 Number of extensions: 5852 Number of successful extensions: 38 Number of sequences better than 1.0e-20: 1 length of query: 936 length of database: 10,358,551 effective HSP length: 16 effective length of query: 920 effective length of database: 10,329,639 effective search space: 9503267880 effective search space used: 9503267880 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)