BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF04RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1424 1719 0.0
>3x_Contig1424
Length = 9842
Score = 1719 bits (867), Expect = 0.0
Identities = 880/883 (99%), Gaps = 1/883 (0%)
Strand = Plus / Plus
Query: 49 tcagaacttaagaaacaa-gggctaaaaagagtggaaattatgaatttagtgacaacgag 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 tcagaacttaagaaacaaagggctaaaaagagtggaaattatgaatttagtgacaacgag 8791
Query: 108 tctgaagatgattacagaagcgaagatgatagccgtggccgaagaagaagaggcgattat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 tctgaagatgattacagaagcgaagatgatagccgtggccgaagaagaagaggcgattat 8851
Query: 168 gacgacgaagaagaggaagagtcggaatacgatgaggaagaagatgactatgatctgggc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8852 gacgacgaagaagaggaagagtcggaatacgatgaggaagaagatgactatgatctgggc 8911
Query: 228 tatgaaaaatcaaagacccgcggaagagagcgcgcagatattcatgaagtagaatgggct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8912 tatgaaaaatcaaagacccgcggaagagagcgcgcagatattcatgaagtagaatgggct 8971
Query: 288 gaagatgacaatttggacagggagtcttcccttgatgattataataaaatacaaattggc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8972 gaagatgacaatttggacagggagtcttcccttgatgattataataaaatacaaattggc 9031
Query: 348 cgttcctttgtcgctaaattttgcttctatccccatttcaacaagatagtggaaggatgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9032 cgttcctttgtcgctaaattttgcttctatccccatttcaacaagatagtggaaggatgc 9091
Query: 408 tacggtagagtgaacattggtaaggacaagcacacaggtaattcaatgtatcgtatggta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9092 tacggtagagtgaacattggtaaggacaagcacacaggtaattcaatgtatcgtatggta 9151
Query: 468 aaaattgaacgtgtatttttacaaaaaccatacaacatgggtaaattctttactaatcaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9152 aaaattgaacgtgtatttttacaaaaaccatacaacatgggtaaattctttactaatcaa 9211
Query: 528 tattttggtgtcactcaaggcaaagacagaaaaattttccagatgagctatttcagtgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9212 tattttggtgtcactcaaggcaaagacagaaaaattttccagatgagctatttcagtgat 9271
Query: 588 agtcctgtcactcaaccagaatacgagcgttatttactttctttggaaaaatacgacatt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9272 agtcctgtcactcaaccagaatacgagcgttatttactttctttggaaaaatacgacatt 9331
Query: 648 acacagccttcaccctatattctaaataacaagtccaaggcagtaaatgaattcgtatgc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9332 acacagccttcaccctatattctaaataacaagtccaaggcagtaaatgaattcgtatgc 9391
Query: 708 gaacctctcacaccgaaattgatggacgatatcgttcgtaatagaatggtattcaataag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392 gaacctctcacaccgaaattgatggacgatatcgttcgtaatagaatggtattcaataag 9451
Query: 768 aaactttcaggtacaaatgctgtcatggaaaaacaagtgctcaaagaaaaactgcaattc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9452 aaactttcaggtacaaatgctgtcatggaaaaacaagtgctcaaagaaaaactgcaattc 9511
Query: 828 tcttaacaatctggcgatattgagagtgaaagtaaatatgctaaccaacttaaagcatta 887
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9512 tctaaacaatctggcgatattgagagtgaaagtaaatatgctaaccaacttaaagcatta 9571
Query: 888 gaaaagagactaagttcctatgagaagcatcatggaaacgatc 930
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9572 gaaaagagactaagttcctatgagaagcatcatgaaaacgatc 9614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8178
Number of Sequences: 1807
Number of extensions: 8178
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)