BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF06FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1568 0.0
>3x_Contig1781
Length = 20717
Score = 1568 bits (791), Expect = 0.0
Identities = 843/854 (98%), Gaps = 5/854 (0%)
Strand = Plus / Plus
Query: 86 ctaagtacaaagccaagaacaacagcaacaatagtaatagtaattctggtaacactaatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9060 ctaagtacaaagccaagaacaacagcaacaatagtaatagtaattctggtaacactaatc 9119
Query: 146 acaacacaaacggcaacagttcacataattccccatcaccagaactctcgttaaaccaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 acaacacaaacggcaacagttcacataattccccatcaccagaactctcgttaaaccaag 9179
Query: 206 gtaattccacgcttaaaaagagctcagtgaaatcccgtaatgacaaatcaaagaactaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 gtaattccacgcttaaaaagagctcagtgaaatcccgtaatgacaaatcaaagaactaat 9239
Query: 266 ctcatgtactttaatcgtaaacccaaatcatctcaaacctaaatgaaaggcgtgataaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 ctcatgtactttaatcgtaaacccaaatcatctcaaacctaaatgaaaggcgtgataaaa 9299
Query: 326 ccatattataaaaaaaaaaaccataaaaaaaattaactaaaacgatgaaactatgagtcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 ccatattataaaaaaaaaaaccataaaaaaaattaactaaaacgatgaaactatgagtcg 9359
Query: 386 gggaaaacttgttaaatatatccgtatgtaacctatccacatgtacattttatatatttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 gggaaaacttgttaaatatatccgtatgtaacctatccacatgtacattttatatatttc 9419
Query: 446 cctctcactataagcatatcaccgaaacattattgttgtcttccctttttgttccttctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 cctctcactataagcatatcaccgaaacattattgttgtcttccctttttgttccttctt 9479
Query: 506 tctctaagtcacaaccctttgaagttggttcgagcttgatgaaatttaaaggaacaaaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 tctctaagtcacaaccctttgaagttggttcgagcttgatgaaatttaaaggaacaaaga 9539
Query: 566 tcttcatgtgcacatcacaatgatagaaaaggtgattggcagaaagatcagtgctgaagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9540 tcttcatgtgcacatcacaatgatagaaaaggtgattggcagaaagatcagtgctgaagc 9599
Query: 626 caaggggacaggtgaggagatacaactctagggtcatagaaaccatcagctatgttagtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9600 caaggggacaggtgaggagatacaactctagggtcatagaaaccatcagctatgttagtt 9659
Query: 686 cctccagcgaatttcgggattcccgaggaaggtatctatcgatgcagtaaacttgagacc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9660 cctccagcgaatttcgggattcccgaggaaggtatctatcgatgcagtaaacttgagacc 9719
Query: 746 attaacctatcatttttggagactttgaattt-aatacgatcatattcatcggtggtcaa 804
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9720 attaacctatcatttttggagactttgaatttaaatacgatcatattcatcggtggtcaa 9779
Query: 805 atnccgagtatattcttcaaagag-tcttcgccactaacggcatagattactttgtcatt 863
|| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9780 atcccgagtaatttcttcaaagagttcttcgccactaacggcatagattactttgtcatt 9839
Query: 864 aagacctctggtgattcgagttcttttggtagcccccagatacaaaaaagcgtcaattct 923
||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||
Sbjct: 9840 aagacctctggtgattcgagttc-tttggtag-ccccagatcacaaaaagcgtcaa-tct 9896
Query: 924 tctgcgaatcatgg 937
||||||||||||||
Sbjct: 9897 tctgcgaatcatgg 9910
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,215
Number of Sequences: 1807
Number of extensions: 12215
Number of successful extensions: 131
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)