BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZF06RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig925                                                         1689   0.0  

>3x_Contig925 
          Length = 3823

 Score = 1689 bits (852), Expect = 0.0
 Identities = 876/884 (99%)
 Strand = Plus / Minus

                                                                        
Query: 54   tttcccccccctttgaatattaaaacaaccttatactagatagaaaaggcaggttttttt 113
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3442 tttcccccccctttgaatatgaaaacaaccttatactagatagaaaaggcaggttttttt 3383

                                                                        
Query: 114  cagatcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgtag 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3382 cagatcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgtag 3323

                                                                        
Query: 174  agcgtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgattatgagtta 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 3322 agcgtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgaagatgagtta 3263

                                                                        
Query: 234  gatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcgaa 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3262 gatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcgaa 3203

                                                                        
Query: 294  actggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcga 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 actggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcga 3143

                                                                        
Query: 354  ttaaaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgcc 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 ttaaaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgcc 3083

                                                                        
Query: 414  cacaaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatga 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 cacaaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatga 3023

                                                                        
Query: 474  ggaattgaccgatatttagccgtatcttgtctttaacccactttgttacccggccttttg 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 ggaattgaccgatatttagccgtatcttgtctttaacccactttgttacccggccttttg 2963

                                                                        
Query: 534  ccctttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaac 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 ccctttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaac 2903

                                                                        
Query: 594  gatgagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtct 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 gatgagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtct 2843

                                                                        
Query: 654  ccgacagctagctagactgttataataccaattgtccccgccatgtcagttctcagacca 713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 ccgacagctagctagactgttataataccaattgtccccgccatgtcagttctcagacca 2783

                                                                        
Query: 714  ttaagattgttactactgggtgcacccggttctggtaaaggtactcagacctcgaaactg 773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ttaagattgttactactgggtgcacccggttctggtaaaggtactcagacctcgaaactg 2723

                                                                        
Query: 774  ttgaaagaattcggatccatcaaagctatctcatctggagatttgctacgtaaacagatt 833
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2722 ttgaaagaattcggatccatcaaggctatctcatctggagatttgctacgtaaacagatt 2663

                                                                        
Query: 834  gaacatggcacaccgttaggttttagtgcctcctcgtatattgagaaaggccagttgtta 893
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2662 gaacatggcacaccgttaggtttaagtgcctcctcgtatattgagaaaggccagttgtta 2603

                                                        
Query: 894  cccgatgatttgatcaccgggagtgtgtgtgacgaattgaagtc 937
            ||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 2602 cccgatgatttgatcaccggagttgtgtgtgacgaattgaagtc 2559


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5483
Number of Sequences: 1807
Number of extensions: 5483
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)