BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig627 1518 0.0
>3x_Contig627
Length = 1782
Score = 1518 bits (766), Expect = 0.0
Identities = 827/846 (97%), Gaps = 2/846 (0%)
Strand = Plus / Plus
Query: 44 gcttatctaaattgtggtcgtgtttaagcctcaatcaaggtatttaaaaaagttcttgag 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129 gcttatctaaattgtggtcgtgtagaagcctcaatcaaggtatttaaaaaagttcttgag 188
Query: 104 ctagacgaaaat-accatttcgcctggtatttcctcgcaatcgctctttcagcattagga 162
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctagacgaaaatcaccatttcgcctggtatttcctcgcaatcgctctttcagcattagga 248
Query: 163 gaatttgatagaagtattgaaattttcgagaggttagtaaatactgatgattctgattaa 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 249 gaatttgatagaagtattgaaattttcgagaggttagtaaatactgatgattctgaagaa 308
Query: 223 tgttttatggtctctgagatatctacactcatagattatgccacagaactatattcccga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgttttatggtctctgagatatctacactcatagattatgccacagaactatattcccga 368
Query: 283 ggatatttgttgaaagcaattgatgtatcttctaaagccatttcgaaaattgaacatgtg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggatatttgttgaaagcaattgatgtatcttctaaagccatttcgaaaattgaacatgtg 428
Query: 343 atatgcttaatatctgcgaacttacagaatgtatggatttctcttagtaaagcgttaaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atatgcttaatatctgcgaacttacagaatgtatggatttctcttagtaaagcgttaaga 488
Query: 403 atatttgttatcattgaatctcagctcgataatttgcctattgattctctcgtaaagatc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atatttgttatcattgaatctcagctcgataatttgcctattgattctctcgtaaagatc 548
Query: 463 ttcagcactgtacctatgtcaactgaagttactgagcttactcttgatggaatttcgttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttcagcactgtacctatgtcaactgaagttactgagcttactcttgatggaatttcgttg 608
Query: 523 gatacaattttggctgatgaatcttctgataatatgactattgcccttaagttcgtcgtt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatacaattttggctgatgaatcttctgataatatgactattgcccttaagttcgtcgtt 668
Query: 583 ctatctgctaagtacccccttcttatggacaatttcaattccatgtctaagacagttcat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctatctgctaagtacccccttcttatggacaatttcaattccatgtctaagacagttcat 728
Query: 643 gccggtttatggtacaatctcggctgcgctgaactgttgggactattaaccgtttcnnga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gccggtttatggtacaatctcggctgcgctgaactgttgggactattaaccgtttcggag 788
Query: 703 gatagttttcgtgatgctgctattcatgcatttaaaagctcgattcgctgccagtcgaat 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gatagttttcgtgatgctgctattcatgcatttaaaagctcgattcgctgccagtcgaat 848
Query: 763 aacacagaatcatgaataggtttangtatcgcaacaatgaatgtcagctaccaggtttnc 822
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 849 aacacagaatcatggataggtttaggtatcgcaacaatgaatgtcagctaccaggtttcc 908
Query: 823 ccacatttgttcataaaagcaattgcgcctaattccagagaaacaggaaagctggtattg 882
| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 909 caacattgtttcataaaagcaattgcgctaaattccagagaaacagg-aagctggtattg 967
Query: 883 gatggc 888
|||||
Sbjct: 968 tatggc 973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6025
Number of Sequences: 1807
Number of extensions: 6025
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)