BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZF08FM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig173                                                          799   0.0  

>3x_Contig173 
          Length = 1358

 Score =  799 bits (403), Expect = 0.0
 Identities = 431/439 (98%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  tttatattcgctagcttcggcagcatctactctcattgatataactaattaaaaattaat 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttatattcgctagcttcggcagcatctactctcattgatataactaattaaaaattaat 379

                                                                       
Query: 147 aagaaagtatactgcagataaactaagcaaaggatggtcgaaataaggtacacacgattc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagaaagtatactgcagataaactaagcaaaggatggtcgaaataaggtacacacgattc 319

                                                                       
Query: 207 gatatcagtaatgacatggagttttccaccatcaagaaattgatcgatgaggatctcagt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatatcagtaatgacatggagttttccaccatcaagaaattgatcgatgaggatctcagt 259

                                                                       
Query: 267 gagccatattcgatatacgtgtacagatttttcctaaaccaatggccgaacctaacgtat 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gagccatattcgatatacgtgtacagatttttcctaaaccaatggccgaacctaacgtat 199

                                                                       
Query: 327 ttggcatgggcagaaggatcgggtaagcccataggatgtatagtatgcaagagcgatact 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttggcatgggcagaaggatcgggtaagcccataggatgtatagtatgcaagagcgatact 139

                                                                       
Query: 387 cataatggagtgcggttaagaggatacattggcatgttagcagtggagaaacaatataga 446
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 cataatggagtgcggttaagaggatacattggcatgttagcagtggagaaacaatataca 79

                                                                       
Query: 447 ggccgtgggatagcgaaaaaactaattaccttagctatagatactatgattgatgaaaaa 506
           ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||  
Sbjct: 78  ggccgtgggatagcgaaaaaact-attaccttagctatagatactctgattgttgaaatt 20

                              
Query: 507 tgtgacgagattatgttgg 525
            ||||||||||| ||||||
Sbjct: 19  cgtgacgagattttgttgg 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,346
Number of Sequences: 1807
Number of extensions: 10346
Number of successful extensions: 1364
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)