BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF08RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 955 0.0
3x_Contig871 178 1e-44
>3x_Contig1606
Length = 11468
Score = 955 bits (482), Expect = 0.0
Identities = 496/500 (99%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 437 ttagtccatgaatctccagagggactatgtggcttgtattgaatttgacccatcttcgac 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtccatgaatctccagagggactatgtggcttgtattgaatttgacccatcttcgac 60
Query: 497 tggcccaatagtataccttcatcggtcagtgaacaaaggtcatatttgaataaatcgtcg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggcccaatagtataccttcatcggtcagtgaacaaaggtcatatttgaataaatcgtcg 120
Query: 557 aaatgatactcacggaatcgactaacatcgaaaaaagagaccgttatagaattgctaccg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatgatactcacggaatcgactaacatcgaaaaaagagaccgttatagaattgctaccg 180
Query: 617 ccttcatttcttgttgtccatacatgacctagttggtttatagtaaggtatcttttatcg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccttcatttcttgttgtccatacatgacctagttggtttatagtaaggtatcttttatcg 240
Query: 677 ctattcccgaaaggtgtcgcgcctgttgaaaatggtcggtattggaattgagctggtggt 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattcccgaaaggtgtcgcgcctgttgaaaatggtcggtattggaattgagctggtggt 300
Query: 737 tggtaaattctgcgatgatttacatgattagctgtcaaagaaggaattgattgaacatga 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtaaattctgcgatgatttacatgattagctgtcaaagaaggaattgattgaacatga 360
Query: 797 gttttttggtctcttatattgtgcggnctcgccattatcatnctcaataaaatcatcttc 856
| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 361 g-tttttggtctcttatattgtgcggcctcgccattatcatcctcaataaaatcatcttc 419
Query: 857 attctcgaaattgtatgtacgcttaggttcatgttgatccatttctgcatctgtgaaaaa 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attctcgaaattgtatgtacgcttaggttcatgttgatccatttctgcatctgtgaaaag 479
Query: 917 gttgtcagagtttatatctt 936
||||||||||||||||||||
Sbjct: 480 gttgtcagagtttatatctt 499
>3x_Contig871
Length = 4172
Score = 178 bits (90), Expect = 1e-44
Identities = 97/98 (98%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 45 cttgagaagaata-ggatttgatacctagggggttgaatgaattgaaaatatcatcgtat 103
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 cttgagaagaataaggatttgatacctagggggttgaatgaattgaaaatatcatcgtat 4134
Query: 104 tttaaaaattcaatgtcttcatcatcatttcccggctg 141
||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 tttaaaaattcaatgtcttcatcatcatttcccggctg 4172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7813
Number of Sequences: 1807
Number of extensions: 7813
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)