BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF09FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1598 0.0
>3x_Contig1173
Length = 7454
Score = 1598 bits (806), Expect = 0.0
Identities = 844/853 (98%), Gaps = 3/853 (0%)
Strand = Plus / Minus
Query: 87 tgatttcttttactgttctgtcaagatt-gaagtagacttcggtttaagaaaattttgag 145
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4046 tgatttcttttactgttctgtcaagatttgaagtagacttcggtttaagaaaattttgag 3987
Query: 146 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 3927
Query: 206 aaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaattttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 aaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaattttt 3867
Query: 266 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 3807
Query: 326 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 3747
Query: 386 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 3687
Query: 446 taatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctcttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 taatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctcttt 3627
Query: 506 acctctcagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgga 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 acctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgga 3567
Query: 566 gtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3566 gtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatgc 3507
Query: 626 gtttgccagatctgcaggtcatttattctcatatgagttccacgaagtaagatacgaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3506 gtttgccagatctgcaggtcatttattctcatatgagttccacgaagtaagatacgaaca 3447
Query: 686 agcgaagcaggaatttaaagaacatggactattggaagctgcaaacactaccataacgca 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3446 agcgaagcaggaatttaaagaacatggactattggaagctggaaacactaccataacgca 3387
Query: 746 tagagatgtttgtaaagatggatttgaaattaanaacggtgacaccacatcgcatgaatt 805
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3386 tagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccacatcgcatgaatt 3327
Query: 806 cagaggtccagaggaaacgaaagttggagttgaatgctgactgcatatttttagatcttc 865
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3326 cagaggtccagaggaaacg-aaggtggagttgaatgctgactgcatatttttagatcttc 3268
Query: 866 cagcaccatgggatgccatacccaatttgacttccgttatctcaaaggaaaagaa-gtaa 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3267 cagcaccatgggatgccatacccaatttgacttccgttatctcaaaggaaaagaaggtaa 3208
Query: 925 atttctgttgctt 937
|| |||| |||||
Sbjct: 3207 atctctgctgctt 3195
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6219
Number of Sequences: 1807
Number of extensions: 6219
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)