BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF09RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1567 1641 0.0
>3x_Contig1567
Length = 11673
Score = 1641 bits (828), Expect = 0.0
Identities = 856/864 (99%), Gaps = 2/864 (0%)
Strand = Plus / Plus
Query: 44 cttgctgagatatcagccaaagtttttgatcaaaatttcaatccaacaaatgccagaact 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7726 cttgctgagatatcagccaaagtttttgatcaaaatttcaatccaacaaatgccagaact 7785
Query: 104 gggtctaagatcctagcacagaggcttaaaggacctgctattgcgaattattatggtaac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7786 gggtctaagatcctagcacagaggcttaaaggacctgctattgcgaattattatggtaac 7845
Query: 164 ccagattttatcagattcaagcaattgaagaaactatatccaggcatgaacttctttgat 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7846 ccagattttatcagattcaagcaattgaagaaactatatccaggcatgaacttcgttgat 7905
Query: 224 gaagaagaacaatatagattgactatgcttgaactaagaaagcgtagaggtaagggtgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906 gaagaagaacaatatagattgactatgcttgaactaagaaagcgtagaggtaagggtgct 7965
Query: 284 ccaactaagaagagagaggcctctggtgacggtaaaaagaccaagaagagaaagtgatca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7966 ccaactaagaagagagaggcctctggtgacggtaaaaagaccaagaagagaaagtgatca 8025
Query: 344 aaatgagcccagcctatccttttatcccacttaaagggacttgcaattaacatttccatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8026 aaatgagcccagcctatccttttatcccacttaaagggacttgcaattaacatttccatc 8085
Query: 404 atataaaaataccttgtatataaattatatcagtcagttcaaatagacccaagaatttaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8086 atataaaaataccttgtatataaattatatcagtcagttcaaatagacccaagaatttaa 8145
Query: 464 cgaatttcaactatgtttttattaaatacgaatattcaagtaagattcaaactatgcaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8146 cgaatttcaactatgtttttattaaatacgaatattcaagtaagattcaaactatgcaat 8205
Query: 524 ctgtgccattaattgtggttgtgagaggggtttatatcgtatcttgttccattaccatct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8206 ctgtgccattaattgtggttgtgagaggggtttatatcgtatcttgttccattaccatct 8265
Query: 584 ttaactttttccatagtaaatcgatatcaattggatgtctcggtagattatggtacaaaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266 ttaactttttccatagtaaatcgatatcaattggatgtctcggtagattatggtacaaaa 8325
Query: 644 cacgatagagttcatctcttcgtacattaagaactgatccctgactcaccatcttcaaag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8326 cacgatagagttcatctcttcgtacattaagaactgatccctgactcaccatcttcaaag 8385
Query: 704 tctcaaccgagaacatctgtctttgaatggatttcatgacgtttgtgaatggttcanagg 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8386 tctcaaccgagaacatctgtctttgaatggatttcatgacgtttgtgaatggttcaaagg 8445
Query: 764 tcatgaaaaagctgattggattattcgatattaataagtgatcatcatatactttgaact 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8446 tcatgaaaaagctgattggattattcgatattaataagtgatcatcatatactttgaact 8505
Query: 824 tgataccaccaggtaaccttttagcatcttttattccgt-aaagncatgcaaataaaggg 882
||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 8506 tgataccaccaggtaaccttttagcatctttta-tccgtaaaagcaatgcaaataaaggg 8564
Query: 883 aaatggttgatangggccanactt 906
|||||||||||| |||||| ||||
Sbjct: 8565 aaatggttgataagggccaaactt 8588
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8104
Number of Sequences: 1807
Number of extensions: 8104
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)