BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZF11RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1512                                                        1665   0.0  

>3x_Contig1512 
          Length = 8803

 Score = 1665 bits (840), Expect = 0.0
 Identities = 876/887 (98%), Gaps = 1/887 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcttctcttctttctctgggttcattagaatcaaatttatcgtttataatacgctctatg 102
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5955 gcttctcttctttctctgggttcataagaatcaaatttatcgtttataatacgctctatg 5896

                                                                        
Query: 103  tggttcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5895 tggttcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatg 5836

                                                                        
Query: 163  gtgtcccttatctttggatgtaacgatattacaaaagtccatccggcacataattatttt 222
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | 
Sbjct: 5835 gtgtcccttatctttggatgtaacgatattacaaaagtccatccggcacataaaaagatg 5776

                                                                        
Query: 223  aatttccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaat 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5775 aatttccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaat 5716

                                                                        
Query: 283  agcagtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaactta 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5715 agcagtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaactta 5656

                                                                        
Query: 343  gccaaaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaag 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5655 gccaaaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaag 5596

                                                                        
Query: 403  tcagttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtgga 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5595 tcagttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtgga 5536

                                                                        
Query: 463  tttttcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatca 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5535 tttttcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatca 5476

                                                                        
Query: 523  ggcttatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaagga 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5475 ggcttatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaagga 5416

                                                                        
Query: 583  cccgatacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcat 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5415 cccgatacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcat 5356

                                                                        
Query: 643  aaagtataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaat 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355 aaagtataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaat 5296

                                                                        
Query: 703  ggggcgccaagcctcgaattcatctgcacgaagttcctactcattatcggcacagacaag 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5295 ggggcgccaagcctcgaattcatctgcacgaagttcctactcattatcggcacagacaag 5236

                                                                        
Query: 763  ccaggtcttcctgcacctgcctgtaccctattctctatagtatcagtagccagatcatta 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235 ccaggtcttcctgcacctgcctgtaccctattctctatagtatcagtagccagatcatta 5176

                                                                        
Query: 823  gaggcaggcaatgccatatatataatcttctcaacaagcttgtcatttaaacagctctga 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 5175 gaggcaggcaatgccatatatataatcttctcaacaagcttgtcatttaacaggctctga 5116

                                                           
Query: 883  gtgctttgcgatgggctggtatcagaccgncccg-tgtgctcttcca 928
            ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 5115 gtgctttgcgatgggctggtatcagaccgccccgttgtgctcttcca 5069


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5953
Number of Sequences: 1807
Number of extensions: 5953
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)