BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF12FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1439 0.0
>3x_Contig1799
Length = 39855
Score = 1439 bits (726), Expect = 0.0
Identities = 825/846 (97%), Gaps = 9/846 (1%)
Strand = Plus / Plus
Query: 86 tccttttactatatcattatctctatgcctaattcttctctcttcctattttcttaataa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27247 tccttttactatatcattatctctatgcctaattcttctctcttcctattttcttaataa 27306
Query: 146 ataacccgtttcctctggacccttttctcctatcgtttgtaggttttctccgagaagaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27307 ataacccgtttcctctggacccttttctcctatcgtttgtaggttttctccgagaagaat 27366
Query: 206 tatcgtttgtgacagttctatatatatatatgtatttgtacattttcttttcttcgctgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27367 tatcgtttgtgacagttctatatatatatatgtatttgtacattttcttttcttcgctgg 27426
Query: 266 tgtatactaaaacttatttcagttataaattaaggtttactattcttatggttagcgtag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27427 tgtatactaaaacttatttcagttataaattaaggtttactattcttatggttagcgtag 27486
Query: 326 caaataatcagtcttggatggtaaggttcattattgcttggctatttgcatgtgatataa 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27487 -aaataatcagtcttggatggtaaggttcattattgcttggctatttgcatgtgatataa 27545
Query: 386 tgtttttgccttagaagctttattttcaatgatttttaaacacgaaatcgtaaatttcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27546 tgtttttgccttagaagctttattttcaatgatttttaaacacgaaatcgtaaatttcag 27605
Query: 446 gttacttaactgctactgtgaaatgcgatttctttaaggattgtggaatatctaggtatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27606 gttacttaactgctactgtgaaatgcgatttctttaaggattgtggaatatctaggtatt 27665
Query: 506 caacccttggtgtttcaagtatctgctaggtatacttcaatagcgaaaactgtgcatttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27666 caacccttggtgtttcaagtatctgctaggtatacttcaatagcgaaaactgtgcatttc 27725
Query: 566 ataatggtgtcaaaaatgttgcaacctacggatattgtaattgcaaaagtaaaaggttat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27726 ataatggtgtcaaaaatgttgcaacctacggatattgtaattgcaaaagtaaaaggttat 27785
Query: 626 ccaccatggccagcgatggttataccgtttgagataatacctcagcaaattcttacgaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27786 ccaccatggccagcgatggttataccgtttgagataatacctcagcaaattcttacgaaa 27845
Query: 686 aatagatccaagcttccagatgaatcagaccaagatttagatagtgctgagaatattgaa 745
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27846 aatagatccaagcttccagatgaatcagaccaagattcagatagtgctgagaatattgaa 27905
Query: 746 tattcacctgtgcttactttttaagaaattacttcgtgagttaaccaattattgcgtgaa 805
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 27906 tattcacctgtgcttac-ttttaagaaatttactcgtgagttaaccaattattgcgtgaa 27964
Query: 806 gtttttttcatgatgattcctacattttggttaaaccccacgtaattttgcatgaggttg 865
| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||
Sbjct: 27965 g-ttttttcatgatgattcctaca-tttggttaaa-cccacgtaa-tttgcatga-gttg 28019
Query: 866 acacttccacagnatcgaggcctttcttatttacgatttactgttagacttcgaaaaatt 925
||||| |||||| ||||||| ||||||||| || || || || |||||||||||||||
Sbjct: 28020 acactaccacag-atcgagg-ctttcttatctaaagttaacagtaagacttcgaaaaatt 28077
Query: 926 tggtcc 931
||||||
Sbjct: 28078 tggtcc 28083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9974
Number of Sequences: 1807
Number of extensions: 9974
Number of successful extensions: 181
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)