BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZF12RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1649 0.0
>3x_Contig1216
Length = 5132
Score = 1649 bits (832), Expect = 0.0
Identities = 881/894 (98%), Gaps = 3/894 (0%)
Strand = Plus / Minus
Query: 46 gctttcaaagcattcgacgttatttttactggtgacgatcccagaattccaaaaggcaga 105
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1419 gctttcaaagcattcgacgttataattactggtgacgatcccagaattccaaaaggcaga 1360
Query: 106 ggtaaaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 ggtaaaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaac 1300
Query: 166 acagatattgagagtaacgaatgtctagtctttgaagatggtattcctggggttattcnt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 1299 acagatattgagagtaacgaatgtctagtctttgaagatggtattcctggggtcaatgct 1240
Query: 226 g-aaagagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtc 284
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 ggaaagagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtc 1180
Query: 285 aaagaccacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 aaagaccacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgac 1120
Query: 345 cgttccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 cgttccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttca 1060
Query: 405 gacaaaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtctt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gacaaaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtctt 1000
Query: 465 cttataagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 cttataagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgc 940
Query: 525 cttgttattgcttatagtggaggaatgaaaagagtaaacgttcagtgaacgtgagtcaat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cttgttattgcttatagtggaggaatgaaaagagtaaacgttcagtgaacgtgagtcaat 880
Query: 585 cggcaaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 cggcaaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtag 820
Query: 645 ttcttgaacaaatatgaaatactttcaccgttgtgcaaacgacgaatagcttctgcaagc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ttcttgaacaaatatgaaatactttcaccgttgtgcaaacgacgaatagcttctgcaagc 760
Query: 705 actgaagagatatcaattgcatccaattttggacaacgtagcatcttttcttcgaaagga 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 actgaagagatatcaattgcatccaattttggacaacgtagcatcttttcttcgaaagga 700
Query: 765 acagtatttgtgcaaactactctatcaagttttgagtggttaatggtttcaatagctttg 824
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 699 acagtatttgtgcaaactactctatcaagttttgagtggttaatgttttcaatagctttg 640
Query: 825 ccagatagaatgccgtgggtaacgatagcaatgacggacttggctttg-tttccaacaga 883
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 ccagatagaatgccgtgggtaacgatagcaatgacggacttggctttgttttccaacaga 580
Query: 884 acttctgcagccttagcccaagtaccacatgtnttcagccatatcatctacaat 937
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 579 acttctgcagccttagccaaagtaccacatgta-tcagccatatcatcaacaat 527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6482
Number of Sequences: 1807
Number of extensions: 6482
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)