BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG02RM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1600 0.0
>3x_Contig1536
Length = 11572
Score = 1600 bits (807), Expect = 0.0
Identities = 824/830 (99%)
Strand = Plus / Minus
Query: 42 gcttgtaacctcctcgtcgtcttcaaacattttagaagaggtaagtttattagtaaaact 101
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7262 gcttgtaacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaact 7203
Query: 102 ggaagggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7202 ggaagggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctc 7143
Query: 162 aatattcgaaaggaacagagagtcagcatgactgctatgtttcttcttggatgttttgag 221
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 7142 aatattcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgag 7083
Query: 222 actgcggctcgcatctatggatgacactttcccatcagagatggatctggctcttttttt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7082 actgcggctcgcatctatggatgacactttcccatcagagatggatctggctcttttttt 7023
Query: 282 gcctgaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctcc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7022 gcctgaaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctcc 6963
Query: 342 agctttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgcctt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6962 agctttgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgcctt 6903
Query: 402 gacctggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6902 gacctggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctc 6843
Query: 462 gtcgctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaata 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6842 gtcgctctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaata 6783
Query: 522 ctcactgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6782 ctcactgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcat 6723
Query: 582 acgcttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6722 acgcttaccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgt 6663
Query: 642 attatcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6662 attatcccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgt 6603
Query: 702 ggcctcagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaatta 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6602 ggcctcagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaatta 6543
Query: 762 tgaccttatttcatgnaacaattgtacatcaatgcaataaccagtggtcaagcaatccgt 821
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6542 tgaccttatttcatggaacaattgtacatcaatgcaataaccagtggtcaagcaatccgt 6483
Query: 822 tacagagtgaataggatcgttccaacacaaggaggtatgttcgttacttt 871
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6482 tacagagtgaataggatcgttccaacacaagaaggtatgttcgttacttt 6433
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5249
Number of Sequences: 1807
Number of extensions: 5249
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)