BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 1574 0.0
>3x_Contig1717
Length = 18389
Score = 1574 bits (794), Expect = 0.0
Identities = 840/853 (98%), Gaps = 2/853 (0%)
Strand = Plus / Plus
Query: 83 gtgatccattgcccttaccttatcttgaccctcagcaaaaaatggaagttggtcgtgacc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15712 gtgatccattgcccttaccttatcttgaccctcagcaaaaaatggaagttggtcgtgacc 15771
Query: 143 tcgaatccagatggaatactataatatcgaacgcaaaggtacgacagactaaagcagagc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15772 tcgaatccagatggaatactataatatcgaacgcaaaggtacgacagactaaagcagagc 15831
Query: 203 ctgtgaataaggcctt-atggtattagaagcaccgtcttttgaaagtcaaagaaaaattt 261
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15832 ctgtgaataaggccaagagggtattataagcaccgtcttttgaaagtcaaagaaaaattt 15891
Query: 262 cccgcaaagtgtttcaatctagtgaaataactacattggaatcccaattgaaggacacta 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15892 cccgcaaagtgtttcaatctagtgaaataactacattggaatcccaattgaaggacacta 15951
Query: 322 gtgccaagctagatcggttgatcgatattttgcaggacaaagaaactttaattggcaaat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15952 gtgccaagctagatcggttgatcgatattttgcaggacaaagaaactttaattggcaaat 16011
Query: 382 caatgacctatgaaccagtgatatggttaagttgtatcattattctcgtactttgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16012 caatgacctatgaaccagtgatatggttaagttgtatcattattctcgtactttgcaatg 16071
Query: 442 tatgggtgtatcattacctatgataaagactgaattgatatataaatgcacgtatttaca 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16072 tatgggtgtatcattacctatgataaagactgaattgatatataaatgcacgtatttaca 16131
Query: 502 tgtaaagttcatagatatcatgacctggagtctatctaatgtacaaagaacggacgctta 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16132 tgtaaagttcatagatatcatgacctggagtctatctaatgtacaaagaacggacgctta 16191
Query: 562 atgcttagagtttcaaaaatataaactgatcattcatcgaagtcatccttgggtggtttc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16192 atgcttagagtttcaaaaatataaactgatcattcatcgaagtcatccttgggtggtttc 16251
Query: 622 ttattctcgtttctcatgtataaatcaatggccgtagagaaggcagcaaaacccgcacaa 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16252 ttattctcgtttctcatgtataaatcaatggccgtagagaaggcagcaaaacccgcacaa 16311
Query: 682 cccactaatgctgcctgaggtccactcttgtatgccaagccaccgcctgtcaaacaacct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16312 cccactaatgctgcctgaggtccactcttgtatgccaagccaccgcctgtcaaacaacct 16371
Query: 742 gcagctacaccgttatatatatcgttctttgcccttaacgattccaccacacattcgaca 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16372 gcagctacaccgttatatatatcgttctttgcccttaacgattccaccacacattcgaca 16431
Query: 802 cctgaataaatcataccgatgtaaccgaaattctttgcactggagtaggatcttttntcc 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16432 cctgaataaatcataccgatgtaaccgaaattctttgcactggagtaggatctttttccc 16491
Query: 862 atattactaaactggatctttatttgctgttt-aacggtagatctgtcagctctttcact 920
|||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct: 16492 atatcactaaactggatctttatctgctgtttcaacggtagatctgcaagctctttcact 16551
Query: 921 ttaattggtaaac 933
||| |||||||||
Sbjct: 16552 ttatttggtaaac 16564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5969
Number of Sequences: 1807
Number of extensions: 5969
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)