BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG03RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1721 0.0
>3x_Contig1694
Length = 18020
Score = 1721 bits (868), Expect = 0.0
Identities = 891/898 (99%), Gaps = 1/898 (0%)
Strand = Plus / Minus
Query: 45 cttcaattcttccgtttctatgacatctgaatgcgaggaaggctcatctgagtcattact 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17929 cttcaattcttccgtttctatgacatctgaatgcgaggaaggctcatctgagtcattact 17870
Query: 105 cccagtgttcctttctgaatctaacacgcctgaacttgaagtaaaatccatttagatgaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17869 cccagtgttcctttctgaatctaacacgcctgaacttgaagtaaaatccatttagatgaa 17810
Query: 165 atattattaactaactaacagctgctgggatcacgatcaacccagaagccccatgttttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17809 atattattaactaactaacagctgctgggatcacgatcaacccagaagccccatgttatc 17750
Query: 225 ttggacaggtaagatgacgataaacgtagtattataggaaatacataaagagaactatta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17749 ttggacaggtaagatgacgataaacgtagtattataggaaatacataaagagaactatta 17690
Query: 285 tcataggtatcacagaaaagaaaataatttttcattttgtaacgttgtttcctttatagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17689 tcataggtatcacagaaaagaaaataatttttcattttgtaacgttgtttcctttatagt 17630
Query: 345 gtatatatatatatatgttgtttaacacatttatgattttttcagtttgaaaacataacc 404
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17629 gtgtatatatatatatgttgtttaacacatttatgattttttcagtttgaaaacataacc 17570
Query: 405 ataaaaaaaccttaaaatcgagccggacagacacaattagaggataatgtttccaagatg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17569 ataaaaaaaccttaaaatcgagccggacagacacaattagaggataatgtttccaagatg 17510
Query: 465 caaggaacgaatcccacatcggcataaaagtgacagtccatacaagtgactcaatagagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17509 caaggaacgaatcccacatcggcataaaagtgacagtccatacaagtgactcaatagagg 17450
Query: 525 atactatacaatgggcggggcacaaaacaatgagtattcttttttaaattcttagatttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17449 atactatacaatgggcggggcacaaaacaatgagtattcttttttaaattcttagatttc 17390
Query: 585 ctttcatgtaagggaggatgacatgttgagtatacgttacgcattaatgatataacaaga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17389 ctttcatgtaagggaggatgacatgttgagtatacgttacgcattaatgatataacaaga 17330
Query: 645 gatcagcgatataaaaacaaattatcagtttatctccttctctccttatttggtgccttc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17329 gatcagcgatataaaaacaaattatcagtttatctccttctctccttatttggtgccttc 17270
Query: 705 ttcaccaccgtgaacttgcttggagatgtactcagcagcttcacctagcttgttcttggc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17269 ttcaccaccgtgaacttgcttggagatgtactcagcagcttcacctagcttgttcttggc 17210
Query: 765 ttcatcgacatattcttgagcggtttcaccgaaagactntccagtagcatcgtccttacc 824
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 17209 ttcatcgacatattcttgagcggtttcaccgaaagactttccagtagcatcgtccttacc 17150
Query: 825 ttcttgggcagagtcgtggactgtttgacct-aacctttgttttcttgtggttgaacctt 883
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17149 ttcttgggcagagtcgtggactgtttgacctaaacctttgttttcttgtggttgaacctt 17090
Query: 884 accggccagcttgtcagcttggtcagttacaacttccttacccnttttcaagtagccc 941
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 17089 accggccagcttgtcagcttggtcagttacaacttccttacccttttccaagtagccc 17032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,414
Number of Sequences: 1807
Number of extensions: 11414
Number of successful extensions: 1056
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)