BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1556 1647 0.0
>3x_Contig1556
Length = 10874
Score = 1647 bits (831), Expect = 0.0
Identities = 855/859 (99%), Gaps = 3/859 (0%)
Strand = Plus / Minus
Query: 48 tgtatactattggaatcc-catcgttcttcagacacagatttgaaatgacatttaataaa 106
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10310 tgtatactattggaatccacatcgttcttcagacacagatttgaaatgacatttaataaa 10251
Query: 107 attatttttatacaacaataaacctaaacatatggagattgtttaaatctaatcttgagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10250 attatttttatacaacaataaacctaaacatatggagattgtttaaatctaatcttgagt 10191
Query: 167 cttttgagaaccacgtaacaaaccagttcttctggcagcgatcaaaccagtcttttgacc 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10190 cttttgagaaccacgtaacaaaccagttcttctggcagcgatcaaaccagccttttgacc 10131
Query: 227 agaaacagcacctctggagatggtagaagccttaccaatatgttgatggttaccaccacc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10130 agaaacagcacctctggagatggtagaagccttaccaatatgttgatggttaccaccacc 10071
Query: 287 gtgagggtgatcaacagggttcatggcaacaccacgagtctttggccaagagtttctctt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10070 gtgagggtgatcaacagggttcatggcaacaccacgagtctttggccaagagtttctctt 10011
Query: 347 gactctgtacttgtggaaagcacgaccagccttcaacaatggcttgtcgattctaccacc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10010 gactctgtacttgtggaaagcacgaccagccttcaacaatggcttgtcgattctaccacc 9951
Query: 407 accggcaacaacaccaatgacacctctggcatcagaagaaatgatcttcttagcaccaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9950 accggcaacaacaccaatgacacctctggcatcagaagaaatgatcttcttagcaccaga 9891
Query: 467 tggtaatctaactctggtcttgttgtcttctgggttgtgaccaataacgataacgtagtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9890 tggtaatctaactctggtcttgttgtcttctgggttgtgaccaataacgataacgtagtt 9831
Query: 527 accggaagctctggccaaagcacctctgtcacctggtctttcttcgacgttagagatgat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9830 accggaagctctggccaaagcacctctgtcacctggtctttcttcgacgttagagatgat 9771
Query: 587 agtaccttctgggacggaacccaatggcaaaacgttaccaacgttcaaagaagccttctt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9770 agtaccttctgggacggaacccaatggcaaaacgttaccaacgttcaaagaagccttctt 9711
Query: 647 accagcgtaaatgaattgaccggtgtggagaccttcgttggcaatgaaggtttcttcacg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9710 accagcgtaaatgaattgaccggtgtggagaccttcgttggcaatgaaggtttcttcacg 9651
Query: 707 caacttgtacttgtatgggtcacggaagacaaccttagccaaaggagcacctctaccagc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9650 caacttgtacttgtatgggtcacggaagacaaccttagccaaaggagcacctctaccagc 9591
Query: 767 atcgtggacgatttgcttaac-acaccacgaatgtaaccgtgacgttcagcgtaatccaa 825
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9590 atcgtggacgatttgcttaacaacaccacgaatgtaaccgtgacgttcagcgtaatccaa 9531
Query: 826 gtttctcaacttggcagcaccttgtctcaatctggtgtgagaggtgaagatag-accagc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9530 gtttctcaacttggcagcaccttgtctcaatctggtgtgagaggtgaagatagaaccagc 9471
Query: 885 accctttctttggtttcta 903
|||||||||||||||||||
Sbjct: 9470 accctttctttggtttcta 9452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6123
Number of Sequences: 1807
Number of extensions: 6123
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)