BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG05FM1.SCF screened BAC_end
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1475 0.0
3x_Contig1408 107 4e-23
>3x_Contig1807
Length = 66587
Score = 1475 bits (744), Expect = 0.0
Identities = 787/796 (98%), Gaps = 4/796 (0%)
Strand = Plus / Plus
Query: 86 agtgttaccacttatctgcaatatcactaccttttagtaattagtatgacgatcaaacaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 agtgttaccacttatctgcaatatcactaccttttagtaattagtatgacgatcaaacaa 3774
Query: 146 tcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaagttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 tcggtgatggctaatcgtaccgaaagaggggaagatgtgaataaattagaaacaagttgt 3834
Query: 206 agtatggagtttgtcgaagatattttaaaatactcgagttagcgtatcttttctcatctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 agtatggagtttgtcgaagatattttaaaatactcgagttagcgtatcttttctcatctt 3894
Query: 266 aatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtataatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 aatatggatgaggacaaatctttattgatcatttattatagactaatgaatgtataatcc 3954
Query: 326 aaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctcttcttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 aaccactaatgattgaaatatgtgggtagccctgtaatactgtggccatctctcttcttt 4014
Query: 386 acaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgattcttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 acaatggcaaaatgttaggagaaggacccaatggcgtgattgccaacgggttgattcttg 4074
Query: 446 gatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgttccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 gatgagatctggtatagtgccatttgatatggttgaagttagtaagttttaccgttccag 4134
Query: 506 tacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaagttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 tacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgttcaagttg 4194
Query: 566 gctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatctcaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4195 gctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataatctcaaa 4254
Query: 626 tcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttcagaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 tcggcttcagtcaattgatctcccagtagatagaatttttttaagatttcttcttcagaa 4314
Query: 686 gaactaccaggccctcaagattttatacctttcctttagaatgttctccaccttgtctaa 745
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4315 gaactaccagg-cctcaagattttatacctttcctttagaatgttctccaccttgtctaa 4373
Query: 746 attccttgaacaaagtcagcactggcatatggatggaaagagatggagatttttgccatt 805
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 gtt-cttgaacaaagtcagcactggcatatggatggaaagagatggagatttttgccata 4432
Query: 806 tgacgagtcaaacaaacccagcgaaaaggggtcatttcaccctttggcccggattaaag- 864
|||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||
Sbjct: 4433 tgacgagtcaaacaaacccagcgaaaaggggtca-ttcaccccttcggccggattaaagc 4491
Query: 865 ctaatgatgagcttcc 880
||||||||||||||||
Sbjct: 4492 ctaatgatgagcttcc 4507
>3x_Contig1408
Length = 6607
Score = 107 bits (54), Expect = 4e-23
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 499 gttccagtacaagtttctgagccacaaatggatgtaaggatacccgccacggacagtgtt 558
|||||| || ||||||||||||||||||||||||||||| ||||| || | ||||||
Sbjct: 2369 gttccaatataagtttctgagccacaaatggatgtaagggtaccccgagcgaatagtgtt 2428
Query: 559 caagttggctttgaagtgctgagcgtatacaggatcgaatctgatcatggtagtgtataa 618
||| |||| |||||| |||||| |||||||||| || ||||| | ||||||| |||||
Sbjct: 2429 caaattggttttgaaatgctgaacgtatacagggtcaaatcttacaatggtaggatataa 2488
Query: 619 tctcaaatcggcttcagtcaattgatctcc 648
|||||| || || ||||| |||||||||||
Sbjct: 2489 tctcaagtcagcctcagttaattgatctcc 2518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5942
Number of Sequences: 1807
Number of extensions: 5942
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)