BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG06FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1445 0.0
>3x_Contig1801
Length = 57606
Score = 1445 bits (729), Expect = 0.0
Identities = 808/827 (97%), Gaps = 7/827 (0%)
Strand = Plus / Plus
Query: 83 cctacgaattcatcaaaccgttggccgtgagagctgccatgaatgcgttcccatacgcca 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36748 cctacgaattcatcaaaccgttggccgtgagagctgccatgaatgcgttcccatacgcca 36807
Query: 143 aatatttctggttcttcgaccaaaacgggctaataatgcaacttgacacttccttacaac 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36808 aatatttctggttcttcgaccaaaacgggctaataatgcaacttgacacttccttacaac 36867
Query: 203 aacaactattggaaccataggtattggatgcagctgtcttgaaaagcgttccagtgttcg 262
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36868 aacaactattggaaccaaaggtattggatgcagctgtcttgaaaagcgttccagtgttcg 36927
Query: 263 agaagtcgaacatcaagacctacaaacacttcgatgcaaagaccgctaaaatcattatac 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36928 agaagtcgaacatcaagacctacaaacacttcgatgcaaagaccgctaaaatcattatac 36987
Query: 323 caaaaaccggtgcggggaaactggacacctccagtttcgtcgttactcccagtatacacg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36988 caaaaaccggtgcggggaaactggacacctccagtttcgtcgttactcccagtatacacg 37047
Query: 383 gtaaagcgttcctagattacataaacgacccattggtgagaaactacccatggccatcct 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37048 gtaaagcgttcctagattacataaacgacccattggtgagaaactacccatggccatcct 37107
Query: 443 cgttcactagcgcgatcgggcacttgctacaatggcatccaagaatactaaagagaaccg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37108 cgttcactagcgcgatcgggcacttgctacaatggcatccaagaatactaaagagaaccg 37167
Query: 503 cattggtggtacccaagactattgcctccgtgtacagtccctcagcagttaaaaaacaag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37168 cattggtggtacccaagactattgcctccgtgtacagtccctcagcagttaaaaaacaag 37227
Query: 563 cggacgatgcagaaaggttcaattatatggacggagacttcgtcatcacgtttactggat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37228 cggacgatgcagaaaggttcaattatatggacggagacttcgtcatcacgtttactggat 37287
Query: 623 gtgaagcgtccaaaacttgtgagatagaactggacaaacattatcagctagttaagcagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37288 gtgaagcgtccaaaacttgtgagatagaactggacaaacattatcagctagttaagcagg 37347
Query: 683 actgaaccaactctcatatactttttgtatttcattcttctatatagaacttataactat 742
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 37348 actgaaccaactctcatatac-ttttgta-ttcattcttctatatagaacttataactat 37405
Query: 743 aatcactattattttcaaaaattctgccgatgttgcccctgcaataacttcacacaaaac 802
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 37406 aatcactattatttccaaaaatcctgccgatgttgcccctgcaaaaacttcacacaaaac 37465
Query: 803 tagtgcaccgtaaaacatttcgaagcatgtttcgcagcattcttgcagcaaacttttatt 862
|||||||| | | |||| ||||||||||| ||||||||| |||||||||||||||| |
Sbjct: 37466 tagtgcacggaagaacaattcgaagcatg-ttcgcagca-tcttgcagcaaacttt--at 37521
Query: 863 cttgctgtcacatgttccttaaacccttttcgntcgaggacgcgaaa 909
| |||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct: 37522 cctgctgtcacatgtt-cttaaacctttttcgttcgaggacgcgaaa 37567
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5757
Number of Sequences: 1807
Number of extensions: 5757
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)