BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG06RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1598 0.0
>3x_Contig1512
Length = 8803
Score = 1598 bits (806), Expect = 0.0
Identities = 887/906 (97%), Gaps = 6/906 (0%)
Strand = Plus / Minus
Query: 43 cttctcttctttctctgggttcattagaatcaaatttatcgtttataatacgctctatgt 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5954 cttctcttctttctctgggttcataagaatcaaatttatcgtttataatacgctctatgt 5895
Query: 103 ggttcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatgg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5894 ggttcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatgg 5835
Query: 163 tgtcccttatctttggatgtaacgatattacaaaagtccatccggcacataaaatttttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5834 tgtcccttatctttggatgtaacgatattacaaaagtccatccggcacataaaaagatga 5775
Query: 223 attttccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaat 282
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 attt-ccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaat 5716
Query: 283 agcagtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaactta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5715 agcagtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaactta 5656
Query: 343 gccaaaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5655 gccaaaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaag 5596
Query: 403 tcagttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtgga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5595 tcagttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtgga 5536
Query: 463 tttttcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5535 tttttcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatca 5476
Query: 523 ggcttatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaagga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5475 ggcttatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaagga 5416
Query: 583 cccgatacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5415 cccgatacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcat 5356
Query: 643 aaagtataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355 aaagtataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaat 5296
Query: 703 ggggcgccaagcctcgaattcatctgcacgaagttcctactcattatcggcacagacaag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5295 ggggcgccaagcctcgaattcatctgcacgaagttcctactcattatcggcacagacaag 5236
Query: 763 ccaggtcttcctgcacctgcctgtaccctattctctatagtatcagtagccagatcatta 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235 ccaggtcttcctgcacctgcctgtaccctattctctatagtatcagtagccagatcatta 5176
Query: 823 gaagcaagcaatgccatatatataatcttctcaacaagcttgtcaatttaccaggctctt 882
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 5175 gaggcaggcaatgccatatatataatcttctcaacaagcttgtc-atttaacaggctc-t 5118
Query: 883 gagtgcctttgcgatggggcttgtatcagaccccccccgttgtgctctttcaaatcgcat 942
||||| ||||||||| ||||| |||||||| || ||||||||||||||| || |||||||
Sbjct: 5117 gagtg-ctttgcgat-gggctggtatcaga-ccgccccgttgtgctcttccagatcgcat 5061
Query: 943 ccatat 948
||||||
Sbjct: 5060 ccatat 5055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6595
Number of Sequences: 1807
Number of extensions: 6595
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)