BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG08FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1376 0.0
>3x_Contig1770
Length = 29267
Score = 1376 bits (694), Expect = 0.0
Identities = 731/741 (98%), Gaps = 2/741 (0%)
Strand = Plus / Plus
Query: 89 ttagccataccaaatttagataacgcaacaggttgctgttcactgtattccatcaggaac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttagccataccaaatttagataacgcaacaggttgctgttcactgtattccatcaggaac 8102
Query: 149 acttgagcactgtcaccaacagtcaagtccgcagaatgttggaaaatttcgtgcacatcc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 acttgagcactgtcaccaacagtcaagtccgcagaatgttggaaaatttcgtgcacatcc 8162
Query: 209 ttacctttatccttctttctcttacgggtctttatcttactgaacactatgttggtacca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 ttacctttatccttctttctcttacgggtctttatcttactgaacactatgttggtacca 8222
Query: 269 ggacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 ggacgaatccgtttcccgaaatgatttctatgaaagtgtctcaactgatcttttggtaac 8282
Query: 329 acaactttgtagaatggagattgtaggcgcgtcgccggttgagaatgttctatattcaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 acaactttgtagaatggagattgtaggcgcgtcgccggttgagaatgttctatattcaaa 8342
Query: 389 ttcgaaattgtagatctgatctttttttgatagttctttttcaaaatcttgtaagtgtca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 ttcgaaattgtagatctgatctttttttgatagttctttttcaaaatcttgtaagtgtca 8402
Query: 449 tcgttagagatgttgaactttgctagtagagatttctcattatatggtattagaggttta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 tcgttagagatgttgaactttgctagtagagatttctcattatatggtattagaggttta 8462
Query: 509 acgaccttttgatccgattcgattttattctcattaggcaaaataagtaatcgctcatca 568
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 acgaccttttgtgccgattcgattttattctcattaggcaaaataagtaatcgctcatca 8522
Query: 569 ttcatatcaattggcggttctttagcactcaccttaccatttatgatatcatcttcgttc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8523 ttcatatcaattggcggttctttagcactcaccttaccatttatgatatcatcttcgttc 8582
Query: 629 cattcccagtcttttccatcttcttctanagtgttcttaactgctggcggattcctcttg 688
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 8583 cattcccagtctttcccatcttcttctaaagtgttctcaactgctggcggattcctcttg 8642
Query: 689 ttactcgtcattggctcctcattttctctatcgtcaacaattttctcataat-ccattca 747
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8643 ttactcgtcattggctcctcattttctctatcgtcaacaattttctcataatcccattca 8702
Query: 748 ttagctacaatgagaagatctttcggtatcacttcatcgtgctcatctttcttgttatct 807
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 8703 tcagctacaatgagaagatcttccggtatcacttcatcgtgctcatctttcttgtcatct 8762
Query: 808 acagtattcttctttatatat 828
|||||| ||||||||||||||
Sbjct: 8763 acagta-tcttctttatatat 8782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7726
Number of Sequences: 1807
Number of extensions: 7726
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)