BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG08RM1.SCF screened BAC_end
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 605 e-173
3x_Contig602 151 3e-36
>3x_Contig1020
Length = 4879
Score = 605 bits (305), Expect = e-173
Identities = 339/348 (97%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 533 tcgtggaatggatgatcccagggttgttgaaggagccaaatgggtcggaccctttgaata 592
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtggaatggatgatcccagg-ttgttgaaggagccaaatgggtcggaccctttgaata 59
Query: 593 acgaagcagcaacgttgcaactgaaggataaagatatgtatgaacaaaagatacatgaat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acgaagcagcaacgttgcaactgaaggataaagatatgtatgaacaaaagatacatgaat 119
Query: 653 acatcaacaaatacgctaccaaggaaaaatacatacagcagtttgggaaatgggacagtt 712
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 120 acatcaacaaatacgctaccaaggaaaaatacatacagcagtttgggaaatggaacagtt 179
Query: 713 ccgatgatacagatgatgaggatgangatgcggatatggacgaatcagacgacgagcaag 772
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 ccgatgatacagatgatgaggatgaggatgcggatatggacgaatcagacgacgagcaag 239
Query: 773 cacatgacggatacgatagtatggaactaagtgatatagaagtcagtgacgacgacgatt 832
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cacatgacgataacgatagtatggaactaagtgatatagaagtcagtgacgacgacgatt 299
Query: 833 gaaatttgaaagttaaaagtt-atgctcatattcacttcattcatcaa 879
||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 300 gaaatttgaaagttaaaagttaatgctcatatccacttcatccatcaa 347
>3x_Contig602
Length = 2648
Score = 151 bits (76), Expect = 3e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 49 attaattaaagatgaggtatgttcgttgaaatggagttttttcttttttttaagatgctg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2565 attaattaaagatgaggtatgttcgttgaaatggagttttttcttttttttaagatgctg 2624
Query: 109 tgtctcagtatcttttatga 128
|||||||||||| |||||||
Sbjct: 2625 tgtctcagtatcctttatga 2644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6928
Number of Sequences: 1807
Number of extensions: 6928
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 2
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)