BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1400 0.0
>3x_Contig1793
Length = 40499
Score = 1400 bits (706), Expect = 0.0
Identities = 796/817 (97%), Gaps = 7/817 (0%)
Strand = Plus / Minus
Query: 37 gcttggtgtcaggtgatttttgttattgagattcccttgattctattgaacattggttaa 96
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27498 gcttggtgtcaggtgatttttgtgattgagattcccttgattctattgaacattggttaa 27439
Query: 97 gtgctcatgtaatgagcacaggaaagcgttcaatgcattccttttttctaatttgttttt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27438 gtgctcatgtaatgagcacaggaaagcgttcaatgcattccttttttctaatttgttttt 27379
Query: 157 gtttactggtggaatggcatattttggaaatgattttaaaagatcaaaatttatttttaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 27378 gtttactggtggaatggcatattttggaaatgattttaaaagatcaaaatttagagg-aa 27320
Query: 217 ggaagtgaaataactttctgtactgaagagaaataaaagatcaaatgcaaccggagcaag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27319 ggaagtgaaataactttctgtactgaagagaaataaaagatcaaatgcaaccggagcaag 27260
Query: 277 agtaacctttttcgtggtattacgagccaatattaccccattgcacaatttagaatgttt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27259 agtaacctttttcgtggtattacgagccaatattaccccattgcacaatttagaatgttt 27200
Query: 337 tgaatcctctaatcgacggccaaggccttctttatttctgcgatagctctacctggattc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27199 tgaatcctctaatcgacggccaaggccttctttatttctgcgatagctctacctggattc 27140
Query: 397 aaaccctttggacaagttctagtacagttcataattgtgtggcatctgtacaaagacatg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27139 aaaccctttggacaagttctagtacagttcataattgtgtggcatctgtacaaagacatg 27080
Query: 457 gagttttgtagcatttgctttctgataccagcagcttcgtctcttgaatccaccaaccaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27079 gagttttgtagcatttgctttctgataccagcagcttcgtctcttgaatccaccaaccaa 27020
Query: 517 cggtatgcttgcattaaaacagcaggacctaaatattgttcttggttccaccagtaagat 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27019 cggtatgcttgcattaaaacagcaggacctaaatattgttcttggttccaccagtaagat 26960
Query: 577 ggacaagatgtagaacaacaagcacatagaatacattcatataaaccatccaatttctta 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26959 ggacaagatgtagaacaacaagcacatagaatacattcatataaaccatccaatttctta 26900
Query: 637 cggtcagcaatactttgcaaattttccttaccgtctgcaggtacctcggatctttgc-ag 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 26899 cggtcagcaatactttgcaaattttccttaccgtctgcaggtacctcggatctttgcaag 26840
Query: 696 tatggctgaatagacttatattgtttgttagaatgagtcanatcccgaaccaaatctctg 755
|||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 26839 tatggctgaatagacttatattgtttgtagaaatgagtcaaatccggaaccaaatctctg 26780
Query: 756 accatatacatgtgagggaagtggggtagaatctttggttgtttaattttcattttggtc 815
|| |||||||||||| |||||| |||||| ||||||| |||||| |||||||||||||||
Sbjct: 26779 acaatatacatgtga-ggaagt-gggtag-atctttgtttgttt-attttcattttggtc 26724
Query: 816 gattctgcaccaacagcccaaagtgtt-ctaccacca 851
|||||||||| ||||| |||||||||| |||||||||
Sbjct: 26723 gattctgcacaaacaggccaaagtgttcctaccacca 26687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7566
Number of Sequences: 1807
Number of extensions: 7566
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)