BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG11FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig872 1516 0.0
>3x_Contig872
Length = 3350
Score = 1516 bits (765), Expect = 0.0
Identities = 796/806 (98%), Gaps = 1/806 (0%)
Strand = Plus / Minus
Query: 90 acacagcttgccttatcaaacgggtgtcttcattttgaacttgcacacatatgagatggt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 acacagcttgccttatcaaacgggtgtcttcattttgaacttgcacacatatgagatggt 1198
Query: 150 ctcctttaacaaatcgatatctaaaaacatgtttggtcttcattacgcggaattggtggg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 ctcctttaacaaatcgatatctaaaaacatgtttggtcttcattacgcggaattggtggg 1138
Query: 210 gaagagcattgaagaagttatcccatcattcccttcgatgattgcttatattaagcgaaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 gaagagcattgaagaagttatcccatcattcccttcgatgattgcttatattaagcgaaa 1078
Query: 270 ctacccacagtgggatattgctttgcctacaaacaagggtttagtgttaacggagcactt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 ctacccacagtgggatattgctttgcctacaaacaagggtttagtgttaacggagcactt 1018
Query: 330 tttcaggaaaattgattgtgagatgcgaggaaaaggagaggaattctatcactctattgg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tttcaggaaaattgattgtgagatgcgaggaaaaggagaggaattctatcactctattgg 958
Query: 390 cttgaatgctctacacagagatggatctttcataaaggttgatgtacaattgcgcgttat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 cttgaatgctctacacagagatggatctttcataaaggttgatgtacaattgcgcgttat 898
Query: 450 cagttggaattacatggtgttatggataacttactcaagagatcttttcgggaaaaacta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cagttggaattacatggtgttatggataacttactcaagagatcttttcgggaaaaacta 838
Query: 510 ttcttcaaatccatctcaattgaagattctcaacgaaaacaatatcaatgttgtcacaag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttcttcaaatccatctcaattgaagattctcaacgaaaacaatatcaatgttgtcacaag 778
Query: 570 tgccagttcggaaggttcttcaaaaaccaacagtgagaagatttcagtgactgatttcaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgccagttcggaaggttcttcaaaaaccaacagtgagaagatttcagtgactgatttcaa 718
Query: 630 gcaaatgcatgatgatttggaaaagatgaatctgagtctagaaggaagtactgtcggctc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gcaaatgcatgatgatttggaaaagatgaatctgagtctagaaggaagtactgtcggctc 658
Query: 690 gcatctggagaaaaatccaatggaagaaaagaaggangaatacaaagaagttgaagaaac 749
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 657 gcatctggagaaaaatccaatggaagaaaagaaggagganaacaaagaagttgaagaaac 598
Query: 750 agaagaagttccggacgatgatctggaattgaaagcaaaactagaagttgctaaaaagtt 809
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 597 agaagaagttccggacgatgatctggaattgaaagcataactagaagttgctaaaaggtt 538
Query: 810 tcatcangaccagtcacagtttgttaaagatgacaatttc-aattagacaaggaacttat 868
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 537 tcatcaggacaagtcacagtttgttaaagatgacaatttcaaattagacaaggaacttat 478
Query: 869 tgttaatattacattagcttctccac 894
||||||||| |||| |||||||||||
Sbjct: 477 tgttaatatcacatcagcttctccac 452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7438
Number of Sequences: 1807
Number of extensions: 7438
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)