BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG12FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1379 1556 0.0
>3x_Contig1379
Length = 6767
Score = 1556 bits (785), Expect = 0.0
Identities = 850/864 (98%), Gaps = 6/864 (0%)
Strand = Plus / Plus
Query: 90 agcaccgtaaccgtttctaccacctgtaactttcttctcatcgtcatcgtaattagagga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agcaccgtaaccgtttctaccacctgtaactttcttctcatcgtcatcgtaattagagga 476
Query: 150 tgtcaaaagatggccaaaaattaattcaggaatataaataccttccttatcatgaatttc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtcaaaagatggccaaaaattaattcaggaatataaataccttccttatcatgaatttc 536
Query: 210 aacgggaatacccttattttcattcttgacttcaatagtattctcctcttgattaatgac 269
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aacgggaatacccttaccatcattcttgacttcaatagtattctcctcttgattaatgac 596
Query: 270 aacatcaatcttcttcatactaggatcacgaaccttgttatctgcagcgttaaccaagat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aacatcaatcttcttcatactaggatcacgaaccttgttatctgcagcgttaaccaagat 656
Query: 330 ttcatcgaaaattttgaaaagaccagggactatatttacagttttttcaatcatacaatc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttcatcgaaaattttgaaaagaccagggactatatttacagttttttcaatcatacaatc 716
Query: 390 ggttgtttcatcatgaatccattgttgcgattcctgtacttcaacagaaccaatgtatgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggttgtttcatcatgaatccattgttgcgattcctgtacttcaacagaaccaatgtatgt 776
Query: 450 atctggtctctttaaaatatgctctaattgcgatatcttctgataccgttcagagacggt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atctggtctctttaaaatatgctctaattgcgatatcttctgataccgttcagagacggt 836
Query: 510 ctttgactgtgtcattcttaaatcagcaacacgtccaaaaaagacacaccagaaaaaacg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ctttgactgtgtcattcttaaatcagcaacacgtccaaaaaagacacaccagaaaaaacg 896
Query: 570 ctctcttcactaatcctgagctccaatgacagctaatgatttaatcagattttaggagag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ctctcttcactaatcctgagctccaatgacagctaatgatttaatcagattttaggagag 956
Query: 630 tactagtcagtattgataaaacagacacaagacctggttccctactccttctgtcgcaag 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tactagtcagtattgataaaacagacacaagacctggttccctactccttctgtcgcaag 1016
Query: 690 atagaagtgttcattagatctcatcaaaagccttagatgtttttcctgtttttatttttc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 atagaagtgttcattagatctcatcaaaagccttagatgtttttcctgtttttatttttc 1076
Query: 750 tagaattaaagtacgcgtaacaaaacgcactaagaccaaaaaacgttttgaaagagacta 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tagaattaaagtacgcgtaacaaaacgcactaagaccaaaaaacgttttgaaagagacta 1136
Query: 810 gatggcatatctacagctgatatt-aaaagtgacataaatcaaagaag-attctgcattt 867
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
Sbjct: 1137 gatggcatatctacagctgatattaaaaagtgacataaatcaaagaagaatactgcatat 1196
Query: 868 a-atactgaaggcagc-aaaaattcgttgacgagatcc-atttattaattatt-tgcgag 923
| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1197 atatactgaaggcagcaaaaaattcgttgacgagatccaatttattaattattatgcgag 1256
Query: 924 gnggcttaattagagtcgatttca 947
| |||| | |||||||||||||||
Sbjct: 1257 ggggctaatttagagtcgatttca 1280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7814
Number of Sequences: 1807
Number of extensions: 7814
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)