BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZG12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1671 0.0
>3x_Contig1669
Length = 15503
Score = 1671 bits (843), Expect = 0.0
Identities = 884/893 (98%), Gaps = 4/893 (0%)
Strand = Plus / Minus
Query: 46 cttacgtcaagaaggttatcggttttttca-ggactgggaattcttcactggtgaatcca 104
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 2249 cttacgtcaagaaggttatcggttctttcaaggactgggaattcttcactggtgaatcca 2190
Query: 105 tggacccagatggaatgttggtcttgttgaactaccgtgaagatggtaccactccattcg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2189 tggacccagatggaatgttggtcttgttgaactaccgtgaagatggtaccactccattcg 2130
Query: 165 tcgctatttggaagcacggtgtcaaggctgaaaagatctaaacagcttaaggaga-tttt 223
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2129 tcgctatctggaagcacggtgtcaaggctgaaaagatctaaacagcttaaggagaatttt 2070
Query: 224 attccacttcctcgcaatgccatttatttctttattcatctaatatcgtatcatatatgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 attccacttcctcgcaatgccatttatttctttattcatctaatatcgtatcatatatgt 2010
Query: 284 atatacaaataataatacaatatccgaaacaccaagtttgatatccaaaatacgctttaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 atatacaaataataatacaatatccgaaacaccaagtttgatatccaaaatacgctttaa 1950
Query: 344 attgagttctgtcttgaaaggtactaacactagctttaaaattccggtttactcagttgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 attgagttctgtcttgaaaggtactaacactagctttaaaattccggtttactcagttgc 1890
Query: 404 ataatgatttttctatctagtgatttattatggaaaaaaaataagagaaatgaagacatg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 ataatgatttttctatctagtgatttattatggaaaaaaaataagagaaatgaagacatg 1830
Query: 464 atgtggtttatttactatttggggggtttgtaacaatttaatagcaagccatctgtaacc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 atgtggtttatttactatttggggggtttgtaacaatttaatagcaagccatctgtaacc 1770
Query: 524 aaactggtaccaagggataccgatacaaacctagccggttcagagagagtcctttcaaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aaactggtaccaagggataccgatacaaacctagccggttcagagagagtcctttcaaca 1710
Query: 584 caactgtcatgaattcaccttccgctcattatacattgcctggtgtaatgcactatttgc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 caactgtcatgaattcaccttccgctcattatacattgcctggtgtaatgcactatttgc 1650
Query: 644 agacagaatatactaagaatgaaagggacaggatcaattgggagttggaaagatgtgaaa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 agacagaatatactaagaatgaaagggacaggatcaattgggagttggaaagatgtgaaa 1590
Query: 704 tgaaatcgagaatcgcccaattggaaggtgagaatagagatttgaaatctggattggtta 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tgaaatcgagaatcgcccaattggaaggtgagaatagagatttgaaatctggattggtta 1530
Query: 764 aattgcagaaccaattgaaagattctggctgttcgtcatcggggaacctaaacganaacg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1529 aattgcagaaccaattgaaagattctggctgttcgtcatcggggaacctaaacgaaaacg 1470
Query: 824 atgagaccggaaaatccttgccgctagaatcatgggagcaagaggaagaactgttacatt 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 atgagaccggaaaatccttgccgctagaatcatgggagcaagaggaagaactgttacatt 1410
Query: 884 caanactatcgggtgc-agaaaacattaaaggaatagtgtaccttttgaaaag 935
||| |||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1409 caaaactatc-ggtgcaagaaaacattaaagaaatagtgtaccttttgaaaag 1358
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8097
Number of Sequences: 1807
Number of extensions: 8097
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)