BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH01FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1318 1427 0.0
>3x_Contig1318
Length = 8566
Score = 1427 bits (720), Expect = 0.0
Identities = 760/772 (98%), Gaps = 1/772 (0%)
Strand = Plus / Plus
Query: 87 tcttcgcttaacctaatacggaaaagtaattgatcgaaccgaaagaaaaataaatatgaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 tcttcgcttaacctaatacggaaaagtaattgatcgaaccgaaagaaaaataaatatgaa 3054
Query: 147 acaacacttctcaacacgtgacccggaaggttaaaatgcggttttctttttgccttgagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 acaacacttctcaacacgtgacccggaaggttaaaatgcggttttctttttgccttgagg 3114
Query: 207 gattcaatttaggtgacgacgcgttgctcgaacaaccaactgcaccgaataaggaaagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 gattcaatttaggtgacgacgcgttgctcgaacaaccaactgcaccgaataaggaaagtc 3174
Query: 267 aataagggtgcattgctttcgtggtttgttctgatcttagaaatcggagaaacttcgcta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 aataagggtgcattgctttcgtggtttgttctgatcttagaaatcggagaaacttcgcta 3234
Query: 327 cacagaataaccgctgaaatgtaatgaaaaattcctgccaccttaccaaaagcggcaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3235 cacagaataaccgctgaaatgtaatgaaaaattcctgccaccttaccaaaagcggcaaaa 3294
Query: 387 ggccaagccaggataacttagctatctagcaaaatcaagcgtactgatttttcaagccgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 ggccaagccaggataacttagctatctagcaaaatcaagcgtactgatttttcaagccgt 3354
Query: 447 tctttaatcggtcaaaaatgaaagatgcaaaaaatccggtattcagccatattggtgaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3355 tctttaatcggtcaaaaatgaaagatgcaaaaaatccggtattcagccatattggtgaag 3414
Query: 507 aggggcaagaggagactgaatcccgactaaatttttctacgacttgaactgagtgaaacg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3415 aggggcaagaggagactgaatcccgactaaatttttctacgacttgaactgagtgaaacg 3474
Query: 567 gctaggaaaaacctcatgatcggtcaccagaccaacagctgttacaacaatataaaggtg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 gctaggaaaaacctcatgatcggtcaccagaccaacagctgttacaacaatataaaggtg 3534
Query: 627 gagagtaaatgtcacaagaatgttcttagaattactacagacgaatcactttgcctgtgc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3535 gagagtaaatgtcacaagaatgttcttagaattactacagacgaatcactttgcctgtgc 3594
Query: 687 tttcaaccgcactgcaaaaaatgttgaatgcattcatcacaattcaagccgccaaaatta 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3595 tttcaaccgcactgcaaaaaatgttgaatgcattcatcacaattcaagccgccaaaatca 3654
Query: 747 tttgaaaattatggaagcattctattcagaaaattttcttttgattttgggattatgaaa 806
|| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct: 3655 ttgaaaaattatggaagcattctagtcagaaaatttttctttgattttgggattaggaaa 3714
Query: 807 tccttgattgagcattagttaaaaaatttcaagttttgttatccatttgtcc 858
|| ||||||||||||||| |||||||||||||| | |||||| |||||||||
Sbjct: 3715 tcattgattgagcattaggtaaaaaatttcaag-tctgttattcatttgtcc 3765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,403
Number of Sequences: 1807
Number of extensions: 12403
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)