BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH01RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1281 0.0
>3x_Contig1762
Length = 22098
Score = 1281 bits (646), Expect = 0.0
Identities = 774/798 (96%), Gaps = 14/798 (1%)
Strand = Plus / Minus
Query: 45 gcttggcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7350 gcttggcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaat 7291
Query: 105 ttgttgatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7290 ttgttgatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattat 7231
Query: 165 tgtttttgtataccataaggtatatcagaagtcttacgacgttgtatggcataagtaaga 224
|||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 7230 tgttgttgaa-accataaggtatatcagaagtcttacgacgttgtatggcattagaaagg 7172
Query: 225 taagcgcttgacccatgtagtattgggagcaaggttgccgtaacttttctttctcacaga 284
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 gaagcgcttgacccagg-agtattgggagcaaggttgccgtaacttttctttctcacaga 7113
Query: 285 gtttgatgaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7112 gtttgatgaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttg 7053
Query: 345 taatagttgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7052 taatagttgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccac 6993
Query: 405 tccaaaagaatctgcttttgggaagtatatgagctcaatatcatttgaattcgttggtga 464
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 6992 tccaaaagaatctgcttttgggaagtatatgagctcaatatcatttaaatccgttggtga 6933
Query: 465 tgcagtggatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6932 tgcagtggatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaa 6873
Query: 525 tctatagttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6872 tctatagttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaa 6813
Query: 585 tataagtccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6812 tataagtccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaa 6753
Query: 645 cgaatcgttgtcgctaagatagtggaaatgtacagcgtcttt-aatacaatgcataaagt 703
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6752 cgaatcgttgtcgctaagatagtggaaatgtacagcgtctttcaatacaatgcataaagt 6693
Query: 704 taaacccaagtcatcccatcgtttgaaaccaggaaatatcacccggagtggtcgataatt 763
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||
Sbjct: 6692 taaacccaagtcatcccatcgtttgaaaccagaaaatatca-ccggagt-gtcga-aatt 6636
Query: 764 gtaccgttctaagggcatgaatccctctagaccaccatttctacagagtttattattcaa 823
||||| |||||| |||||| ||||||| ||||||||| |||||||||| |||||| ||||
Sbjct: 6635 gtacc-ttctaa-ggcatg-atccctc-agaccacca-ttctacagag-ttatta-tcaa 6583
Query: 824 cccaaagcctgacctatt 841
||||||| ||||||||||
Sbjct: 6582 cccaaag-ctgacctatt 6566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6327
Number of Sequences: 1807
Number of extensions: 6327
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)