BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH03FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1106 1515 0.0
>3x_Contig1106
Length = 5510
Score = 1515 bits (764), Expect = 0.0
Identities = 806/816 (98%), Gaps = 3/816 (0%)
Strand = Plus / Plus
Query: 88 ttggttctggtggttttatccttttcagtttcggcctcatcagaagacgtctcaaatatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 ttggttctggtggttttatccttttcagtttcggcctcatcagaagacgtctcaaatatg 2285
Query: 148 aaaaggaacgattctatcaagggtaacgtaaaatccatattgaaccgctggtgcaaccca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 aaaaggaacgattctatcaagggtaacgtaaaatccatattgaaccgctggtgcaaccca 2345
Query: 208 cttactattttcaccactgcaacaatatcatcacccttaccactattcttaaataatgct 267
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 cttactatctccaccactgcaacaatatcatcacccttaccactattcttaaataatgct 2405
Query: 268 tcatttgtagttgttatgatttctgataggtacttctccaaagatacctctctgatatcg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 tcatttgtagttgttatgatttctgataggtacttctccaaagatacctctctgatatcg 2465
Query: 328 ttgagtaaacctgtcttcgattcctttgcaataccctgcttcaacttcttaatgaaaccc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 ttgagtaaacctgtcttcgattcctttgcaataccctgcttcaacttcttaatgaaaccc 2525
Query: 388 gtattcctcttaatactagaatcaagtttcttggctttatcagggaatacgtcaatcccg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gtattcctcttaatactagaatcaagtttcttggctttatcagggaatacgtcaatcccg 2585
Query: 448 gtccacgccatactgttaatttcattcaagcttgatctccattcattctaaacacaaatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 gtccacgccatactgttaatttcattcaagcttgatctccattcattctaaacacaaatt 2645
Query: 508 caatccataaaagcaaggctttctgttagtattctcgaaaactctcgaccacttaaaagc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 caatccataaaagcaaggctttctgttagtattctcgaaaactctcgaccacttaaaagc 2705
Query: 568 gtacacatacgttcattatgttatttgacgattggataggttcaaagtcggtgcgtaaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 gtacacatacgttcattatgttatttgacgattggataggttcaaagtcggtgcgtaaag 2765
Query: 628 ttcttgctgtcgctgtgacgtgatttcaacagaacttttgttcgatgactttggtagaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 ttcttgctgtcgctgtgacgtgatttcaacagaacttttgttcgatgactttggtagaat 2825
Query: 688 taacatttcacaggattttttttttattcaaagggcttttctcatactggcatctcgaca 747
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2826 taacatttcacaggattttttttttattcaaagggc-tttctcatactggcatctcgaca 2884
Query: 748 ataagttacagagcgaaac-ggatagagtttttggttgcatttatatttatcgtgcttgt 806
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct: 2885 ataagttacagagcgaaacgggatagagttttgggttgcatttata-ttatcgtgcttgt 2943
Query: 807 gatagaagagtgtttatatggtttcatagaatatacacctaattgagtggttaataataa 866
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct: 2944 gatagaagagtgtttatatggttcaatagaatatacacctaattgagtgttaaataataa 3003
Query: 867 ttttaaaagccttcatcacctagcttactttctaaa 902
||||||||||||||||||||||||||||||||||||
Sbjct: 3004 ttttaaaagccttcatcacctagcttactttctaaa 3039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8227
Number of Sequences: 1807
Number of extensions: 8227
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)