BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZH03RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1106                                                        1626   0.0  

>3x_Contig1106 
          Length = 5510

 Score = 1626 bits (820), Expect = 0.0
 Identities = 889/902 (98%), Gaps = 8/902 (0%)
 Strand = Plus / Minus

                                                                        
Query: 40   caattaagaagaaagctattacaaaatttaacgctttatgacaaattatcaaaaagcatt 99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 caattaagaagaaagctattacaaaatttaacgctttatgacaaattatcaaaaagcatt 3378

                                                                        
Query: 100  gttcagttggatacaaaatcaacagcagagaagaaaatacaacagtcaattgccctacat 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 gttcagttggatacaaaatcaacagcagagaagaaaatacaacagtcaattgccctacat 3318

                                                                        
Query: 160  gcatcagcgttcatcgaggagaaaatgctacccttgaaaaaaataccagaaatcttgaac 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 gcatcagcgttcatcgaggagaaaatgctacccttgaaaaaaataccagaaatcttgaac 3258

                                                                        
Query: 220  cctgtgtcacagaaagtagaagtcacaacatcatcggatcttttgttcaataatttaaca 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 cctgtgtcacagaaagtagaagtcacaacatcatcggatcttttgttcaataatttaaca 3198

                                                                        
Query: 280  attgcggaagtaaagaagtacagagaagaacttatggttttgaatgaacaacgatactta 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 attgcggaagtaaagaagtacagagaagaacttatggttttgaatgaacaacgatactta 3138

                                                                        
Query: 340  gtcgaaaatatgcttaattcagctgccaaggaaaggcgcttcgaggaagcgatatccttg 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 gtcgaaaatatgcttaattcagctgccaaggaaaggcgcttcgaggaagcgatatccttg 3078

                                                                        
Query: 400  aaaactaatctttcagaaattgatcagaacatagtgcatttagaaagtaagctaggtgat 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 aaaactaatctttcagaaattgatcagaacatagtgcatttagaaagtaagctaggtgat 3018

                                                                        
Query: 460  gaaggcttttaaaattattatttaacactcaattaggtgtatattctattgaaccatata 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 gaaggcttttaaaattattatttaacactcaattaggtgtatattctattgaaccatata 2958

                                                                        
Query: 520  aacactcttctatcacaagcacgataatataaatgcaa-ccaaaactctat-ccgtttcg 577
            |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 2957 aacactcttctatcacaagcacgataatataaatgcaacccaaaactctatcccgtttcg 2898

                                                                        
Query: 578  ctctgtaacttattgtcgagatgccagtatgagaaagccctttgaataaaaaaaaaatcc 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 ctctgtaacttattgtcgagatgccagtatgagaaagccctttgaataaaaaaaaaatcc 2838

                                                                        
Query: 638  tgtgaaatgttaattctaccaaagtcatcgaacaaaagttctgttgaaatcacgtcacag 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 tgtgaaatgttaattctaccaaagtcatcgaacaaaagttctgttgaaatcacgtcacag 2778

                                                                        
Query: 698  cgacagcaagaactntacgcaccgactttgaacctatccaatcgtcanataacataatga 757
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2777 cgacagcaagaactttacgcaccgactttgaacctatccaatcgtcaaataacataatga 2718

                                                                        
Query: 758  acgtatgtgtacgcttttaagtggtcgagagttttcgagaatactaacagaaagccttgc 817
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 acgtatgtgtacgcttttaagtggtcgagagttttcgagaatactaacagaaagccttgc 2658

                                                                        
Query: 818  ttttatggattgaa-ttgtgtttagaatgaatggagatc-agcttgaatgaaa-taacag 874
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 2657 ttttatggattgaatttgtgtttagaatgaatggagatcaagcttgaatgaaattaacag 2598

                                                                        
Query: 875  tattgcgtggaaccggga-tgacttattccttgataaagcc-agaaacttgattctagta 932
            ||| |||||| ||||||| |||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 2597 tatggcgtgg-accgggattgacgtattccctgataaagccaagaaacttgattctagta 2539

              
Query: 933  tt 934
            ||
Sbjct: 2538 tt 2537


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9035
Number of Sequences: 1807
Number of extensions: 9035
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)