BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1556 0.0
>3x_Contig1645
Length = 12736
Score = 1556 bits (785), Expect = 0.0
Identities = 832/841 (98%), Gaps = 5/841 (0%)
Strand = Plus / Plus
Query: 88 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 7914
Query: 148 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 7974
Query: 208 tcgcagtcactttaaattcaaaggaacaatgtaggaaattccctcaattattgacgtgct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 tcgcagtcactttaaattcaaaggaacaatgtaggaaattccctcaattattgacgtgct 8034
Query: 268 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 8094
Query: 328 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8095 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 8154
Query: 388 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8155 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 8214
Query: 448 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8215 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 8274
Query: 508 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8275 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 8334
Query: 568 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8335 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 8394
Query: 628 tgtaaaattggaaagaatatgtaaacaatgacagaataaacaaacaacactacaaggtat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8395 tgtaaaattggaaagaatatgtaaacaatgacagaataaacaaacaacactacaaggtat 8454
Query: 688 tgattcacaagtcactgtcgcactattaagagaatcatatcatttttgctgaattt-att 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8455 tgattcacaagtcactgtcgcactattaagagaatcatatcatttttgctgaatttaatt 8514
Query: 747 acaatttggcaatcaacgaagctgcttcggc-atgcctacgagtaaacaaaaacctaaga 805
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 8515 acaatttggcaatcaacgaagctgc-tcggcaatgcctacgagtaaacaaaaacctaaga 8573
Query: 806 cgaccaaagcgtcaaaacccaccatgaatgaagccaatagtgacagaaggtgtaagcgct 865
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 8574 cgaccaaagcgtcaaaacccacca-gaaagaagccaatagtgacagaaggtgtaagcg-t 8631
Query: 866 ggtagatctgatcaatgcgcaagaagacataaagtatactcttattattgatatacccgc 925
|||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 8632 ggtagatctgatcagtgcgcaagaggacataaagtatactcatattattgatatacccgc 8691
Query: 926 t 926
|
Sbjct: 8692 t 8692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6735
Number of Sequences: 1807
Number of extensions: 6735
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)