BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1636 1711 0.0
>3x_Contig1636
Length = 15667
Score = 1711 bits (863), Expect = 0.0
Identities = 872/874 (99%), Gaps = 1/874 (0%)
Strand = Plus / Plus
Query: 48 cgcaccggcgtgtagaagtggattgaatttttcgaaaactacgtcctcatcatcatcttc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4163 cgcaccggcgtgtagaagtggattgaatttttcgaaaactacgtcctcatcatcatcttc 4222
Query: 108 ttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaacagg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4223 ttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaacagg 4282
Query: 168 ttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagacatgttcactgat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 ttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagacatgttcactgat 4342
Query: 228 agctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacgaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 agctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacgaga 4402
Query: 288 taatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattgacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4403 taatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattgacc 4462
Query: 348 gaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtatacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 gaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtatacc 4522
Query: 408 agcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatctac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 agcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatctac 4582
Query: 468 gtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccatcgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 gtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccatcgc 4642
Query: 528 acctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaaacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 acctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaaacc 4702
Query: 588 gacaccagaggaacctctacccgtagtggcaatagctaatgctgctgtgttcaacacaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 gacaccagaggaacctctacccgtagtggcaatagctaatgctgctgtgttcaacacaaa 4762
Query: 648 tctaagcatttgagatttagcggtggatggatcaccaaccataaggatatttatgtcacc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 tctaagcatttgagatttagcggtggatggatcaccaaccataaggatatttatgtcacc 4822
Query: 708 tcttagatgtgaaccgttgggtaaatttttttccacaccacccataagcattaataggat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 tcttagatgtgaaccgttgggtaaatttttttccacaccacccataagcattaataggat 4882
Query: 768 ggctntcttaatgtgttcatggccatagatggatggtgctaacgactgggacaaagtgtc 827
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 ggctttcttaatgtgttcatggccatagatggatggtgctaacgactgggacaaagtgtc 4942
Query: 828 gaaaatattatcatgcattgatagcttattgatatttctaatatcattatctgatagcgt 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 gaaaatattatcatgcattgatagcttattgatatttctaatatcattatctgatagcgt 5002
Query: 888 ttc-acggcggacacacctgtagacctggcatgt 920
||| ||||||||||||||||||||||||||||||
Sbjct: 5003 ttcaacggcggacacacctgtagacctggcatgt 5036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7038
Number of Sequences: 1807
Number of extensions: 7038
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)