BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH06FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1473 0.0
>3x_Contig1168
Length = 4574
Score = 1473 bits (743), Expect = 0.0
Identities = 827/847 (97%), Gaps = 6/847 (0%)
Strand = Plus / Plus
Query: 86 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 1603
Query: 146 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 1663
Query: 206 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 1723
Query: 266 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 1783
Query: 326 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1784 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 1843
Query: 386 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 1903
Query: 446 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1904 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 1963
Query: 506 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 2023
Query: 566 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 2083
Query: 626 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 2143
Query: 686 acgttccatatccttatcaggttgctagaagattgtcttcattattatctccaaacttac 745
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2144 acgttccatatccttatcaggttgctagaagattgtcttcatcattatctccaaacttac 2203
Query: 746 ctttcagagttcattttgaaacattagaggtttataattacatttttgagaagattgggc 805
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 cttcaggagttcatttgaaaacattagaggtttataattacatttttgagaagattgggc 2263
Query: 806 ccgacactttgggggaaggaagtgaattatttggattaggtggcgttctaccccttgagt 865
|||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 2264 ccgacacttt-ggggaaggaagtgaa-tatttgga-taggtggcgttcta-cccttgatg 2319
Query: 866 tctttatgcttccattattggttaaacattcattgattgaactgttttagaaataccttg 925
|| |||||| |||| ||| |||||||||| ||||||||||||||| | |||||||| |||
Sbjct: 2320 tc-ttatgcgtcca-tatcggttaaacatccattgattgaactgtatgagaaatacattg 2377
Query: 926 taagtct 932
|||||||
Sbjct: 2378 taagtct 2384
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7258
Number of Sequences: 1807
Number of extensions: 7258
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)