BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1643 0.0
>3x_Contig1590
Length = 13653
Score = 1643 bits (829), Expect = 0.0
Identities = 891/903 (98%), Gaps = 7/903 (0%)
Strand = Plus / Plus
Query: 46 cttcgaaaactgaaatcc-gttacagcttttatgatagaagcggtaaatgaagataaact 104
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3891 cttcgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaact 3950
Query: 105 gtcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3951 gtcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagt 4010
Query: 165 aaaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaatttat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4011 aaaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaat 4070
Query: 225 ggggaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggata 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4071 ggggaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggata 4130
Query: 285 ccgtgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4131 ccgtgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagca 4190
Query: 345 ggctgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 ggctgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctag 4250
Query: 405 aagactatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4251 aagactatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgca 4310
Query: 465 gcccatgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4311 gcccatgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaac 4370
Query: 525 tctacaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatgg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4371 tctacaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatgg 4430
Query: 585 tgcgccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaatttt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4431 tgcgccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaatttt 4490
Query: 645 aagcgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4491 aagcgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaat 4550
Query: 705 atttagaggaagagatatagacatgttgtattctcagcttggatatctttttgagaaagt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4551 atttagaggaagagatatagacatgttgtattctcagcttggatatctttttgagaaagt 4610
Query: 765 tatttgcgctaaaccaagatcttcaagaggaacatcattagaatcatttatcgtctgcct 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4611 tatttgcgctaaaccaagatcttcaagaggaacatcattagaatcatttatcgtctgcct 4670
Query: 825 tgggttac-atccaccagcanactgggaacc-aaattagatgtaaattcttcagtagaag 882
| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 4671 t-ggttacaatccaccagcaaactgggaaccaaaattagatgtaaattcttcagtagaag 4729
Query: 883 acttcttncagggatgcgattatc-gtaaactcaggcttgaagataaatgt-ccaactat 940
||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 4730 acttcttccagggatgcga-tatcggtaaactcaggcttgaagataaatgtcccaactat 4788
Query: 941 cat 943
|||
Sbjct: 4789 cat 4791
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6294
Number of Sequences: 1807
Number of extensions: 6294
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)