BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1534 0.0
>3x_Contig1168
Length = 4574
Score = 1534 bits (774), Expect = 0.0
Identities = 818/829 (98%), Gaps = 3/829 (0%)
Strand = Plus / Plus
Query: 90 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 1603
Query: 150 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 1663
Query: 210 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 1723
Query: 270 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 1783
Query: 330 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1784 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 1843
Query: 390 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 1903
Query: 450 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1904 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 1963
Query: 510 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 2023
Query: 570 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 2083
Query: 630 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 2143
Query: 690 acgttccatatccttatcaggttgctagaagattgtctttatcattatcttcaaacttac 749
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 2144 acgttccatatccttatcaggttgctagaagattgtcttcatcattatctccaaacttac 2203
Query: 750 cttcaggagttcatttgaaaacattagaggtttataattacatttttgagaagattgggc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 cttcaggagttcatttgaaaacattagaggtttataattacatttttgagaagattgggc 2263
Query: 810 ccgacactttgtgggaagg-agtgaatatttgnatagttggcgttctacctttgatgtct 868
||||||||||| ||||||| |||||||||||| |||| |||||||||||| |||||||||
Sbjct: 2264 ccgacactttg-gggaaggaagtgaatatttggataggtggcgttctacccttgatgtct 2322
Query: 869 tatgcgtccatattggttaaac-ttcattgattgaactgtttgagaaat 916
||||||||||||| |||||||| | ||||||||||||||| ||||||||
Sbjct: 2323 tatgcgtccatatcggttaaacatccattgattgaactgtatgagaaat 2371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7010
Number of Sequences: 1807
Number of extensions: 7010
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)