BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1564 0.0
>3x_Contig1590
Length = 13653
Score = 1564 bits (789), Expect = 0.0
Identities = 850/868 (97%), Gaps = 2/868 (0%)
Strand = Plus / Plus
Query: 44 gcttcgaaaactgaaatccagttactgcttttatgatagaagcggtaaatgaagataaac 103
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3890 gcttcgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaac 3949
Query: 104 tgtcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 tgtcgcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaag 4009
Query: 164 taaaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaagtgaatctt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 4010 taaaccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaa 4069
Query: 224 tggggaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 tggggaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggat 4129
Query: 284 accgtgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 accgtgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagc 4189
Query: 344 aggctgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtcta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 aggctgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtcta 4249
Query: 404 gaagactatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4250 gaagactatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgc 4309
Query: 464 agcccatgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4310 agcccatgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaa 4369
Query: 524 ctctacaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4370 ctctacaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatg 4429
Query: 584 gtgcgccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4430 gtgcgccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattt 4489
Query: 644 taagcgcattacagctatctacctgtttgttaagaaaaggtgngaattttgttgccaaaa 703
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4490 taagcgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaa 4549
Query: 704 tatttagaggaagagatatagacatgttgtattctcagcttggatatctttttgaggaag 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4550 tatttagaggaagagatatagacatgttgtattctcagcttggatatctttttgagaaag 4609
Query: 764 ttatttgcgctaaaccaagatcttctagaggaacatcattagaatcatttatcgtctggc 823
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 4610 ttatttgcgctaaaccaagatcttcaagaggaacatcattagaatcatttatcgtctgcc 4669
Query: 824 ttggttacaatccaccagcaaactgggtacccaaaatagatgtaaatttcttcagtagaa 883
||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||
Sbjct: 4670 ttggttacaatccaccagcaaactgggaaccaaaattagatgtaaa-ttcttcagtagaa 4728
Query: 884 gacttctttcaggggatgcgatttcggt 911
|||||||| || |||||||||| |||||
Sbjct: 4729 gacttcttcca-gggatgcgatatcggt 4755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6031
Number of Sequences: 1807
Number of extensions: 6031
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)