BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH08FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1511 0.0
>3x_Contig1457
Length = 7441
Score = 1511 bits (762), Expect = 0.0
Identities = 838/852 (98%), Gaps = 9/852 (1%)
Strand = Plus / Plus
Query: 87 tgaacaaccgttgtagtttcttccgtagtagtgaagttcgcaaagggccaaccctctaaa 146
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 567 tgaacaaccgttgtagtttcttccgtagtagtgaagttcgcaaagg-ccaaccctctaaa 625
Query: 147 cacaccgttatcaaaatggtagttgaaagcataaggcagtggtagatccatcttggcgat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cacaccgttatcaaaatggtagttgaaagcataaggcagtggtagatccatcttggcgat 685
Query: 207 aacttccaaaagttgttccttcttgatggcaaaagggatgtttttaatcacaatagcggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aacttccaaaagttgttccttcttgatggcaaaagggatgtttttaatcacaatagcggt 745
Query: 267 agggataagttcttcagcaatattggcagaaacattatttgaatttggagaagagttgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agggataagttcttcagcaatattggcagaaacattatttgaatttggagaagagttgga 805
Query: 327 gaactcctcattctctacgctggaatcttgaatctgatcgtctgacattagctaaatgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaactcctcattctctacgctggaatcttgaatctgatcgtctgacattagctaaatgaa 865
Query: 387 tcgtatagttctttgagtaaaattgttctaaaaccgcagagtcagttaacgggaaacggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcgtatagttctttgagtaaaattgttctaaaaccgcagagtcagttaacgggaaacggt 925
Query: 447 aaatcgtaagaatgcaagttatgcacacagcacaggccttaaagaaggtattagatggga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aaatcgtaagaatgcaagttatgcacacagcacaggccttaaagaaggtattagatggga 985
Query: 507 cgacaaaaaaattgatatgcgtttcgtagctcttaaaaaaccgatgaacagcaggtgcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 cgacaaaaaaattgatatgcgtttcgtagctcttaaaaaaccgatgaacagcaggtgcaa 1045
Query: 567 cacgtctattttagaaacaaatgcttattgtaatgtctcactttttcctgataaaagcgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 cacgtctattttagaaacaaatgcttattgtaatgtctcactttttcctgataaaagcgg 1105
Query: 627 gaaatttacctgaaaaactgaatctttccactgatataagtaaaaagtcaatacttgtaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 gaaatttacctgaaaaactgaatctttccactgatataagtaaaaagtcaatacttgtaa 1165
Query: 687 tacttgtacgcaaaattttacttccagatagttctgatatcagctgttaaggactcagcc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 tacttgtacgcaaaattttacttccagatagttctgatatcagctgttaaggactcagcc 1225
Query: 747 tttcgaccccctttgttcagttctcgcaaaacaaanaacatatattcgtgttttctcatt 806
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1226 tttcgaccccctttgttcagttctcgcaaaacaaaaaacatata-tcgtgttttctcatt 1284
Query: 807 tttaaaactttttcttaaaaatttctttcttgccttanaaactgcaaaaatttgaaaaag 866
|||||||| ||||||| |||||||||||| |||| || ||||||| ||||||||||||||
Sbjct: 1285 tttaaaac-ttttctt-aaaatttctttc-tgcc-tagaaactgc-aaaatttgaaaaag 1339
Query: 867 ctgccagtactgggtttacattggaataagattggtgggaggtgacacattttcaagttt 926
|||||||||||||||||||| | |||||||||||||||||||||||||| |||| || ||
Sbjct: 1340 ctgccagtactgggtttaca-tcgaataagattggtgggaggtgacaca-tttcgaggtt 1397
Query: 927 ggaaccaaggtt 938
||||||||||||
Sbjct: 1398 ggaaccaaggtt 1409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6950
Number of Sequences: 1807
Number of extensions: 6950
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)