BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig782 1544 0.0
>3x_Contig782
Length = 2529
Score = 1544 bits (779), Expect = 0.0
Identities = 873/893 (97%), Gaps = 10/893 (1%)
Strand = Plus / Minus
Query: 50 gcttgacagaatgcataaggaagctttattcgtggcatgtttcattgccgatgatgctat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 gcttgacagaatgcataaggaagctttattcgtggcatgtttcattgccgatgatgctat 2147
Query: 110 cgccaagaataccatagatttgttgctaagctcagaaattttgtatttcacctccaatga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 cgccaagaataccatagatttgttgctaagctcagaaattttgtatttcacctccaatga 2087
Query: 170 tattaaaccaattttggaaagattacagatttcagctccaataatccatcgtcatttggc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2086 tattaaaccaattttggaaagattacagatttcagctccaataatccatcgtcatctggc 2027
Query: 230 actatacgagaagtactctggcgaccatctttccgaagtaagtaatttgttgaaagcagg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 actatacgagaagtactctggcgaccatctttccgaagtaagtaatttgttgaaagcagg 1967
Query: 290 cgactttaaggaggcggaactagtcaccattactaccgtaggtccaaagttaataatcaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 cgactttaaggaggcggaactagtcaccattactaccgtaggtccaaagttaataatcaa 1907
Query: 350 tgccaaatggaataacgattacttatcagttttggaaacactgttgcaaaggtttccttc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 tgccaaatggaataacgattacttatcagttttggaaacactgttgcaaaggtttccttc 1847
Query: 410 gcacaccatcccaacttgggaaaaaggattgggtgtatatgaaaagtacatcaagctctc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 gcacaccatcccaacttgggaaaaaggattgggtgtatatgaaaagtacatcaagctctc 1787
Query: 470 actacacaactccctcgatcctaatatcatccatcagcttatcaacacattacccaacct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 actacacaactccctcgatcctaatatcatccatcagcttatcaacacattacccaacct 1727
Query: 530 atgcaaagactattcacatcatgaattagtgaacgttgcaagctctcgtatctctgaggc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 atgcaaagactattcacatcatgaattagtgaacgttgcaagctctcgtatctctgaggc 1667
Query: 590 tgtcagtgaattgtttttgatcaacctcaacatgttatcaagaaaaatcccaaaagagag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 tgtcagtgaattgtttttgatcaacctcaacatgttatcaagaaaaatcccaaaagagag 1607
Query: 650 cctgctttctttaccattaggtcaaccggaatcaaattacttaaagaaagtgttgtcctc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cctgctttctttaccattaggtcaaccggaatcaaattacttaaagaaagtgttgtcctc 1547
Query: 710 attgtgaaaacctgtattataagtatataaatgattacaacanaatattaaacgataaaa 769
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1546 attgtgaaaacctgtattataagtatataaatgattacaacaaaatattaaacgataaaa 1487
Query: 770 gttcattaatatggaaggatatcatgaaagttcagtaacccatttcaagaactttttcgg 829
|| || |||||| |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 1486 gtaca-taatatagaaggatatcatgaaagttcag-aacccatttcaagaac-ttttcgg 1430
Query: 830 atgccaaattagtattatttttttggactttagacatcgccttacgcggtggcgtaacga 889
||| ||||||||||||||| ||| ||||||||||||||||| ||| || |||||||||
Sbjct: 1429 atg-caaattagtattattcttt--gactttagacatcgcctaccgc-gtcgcgtaacga 1374
Query: 890 ttcattgaccctcgagtattgcggttcgaagcagggctattctggaaattcat 942
|||| ||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct: 1373 ttcaatga-cctcgagtatcgcgg-tcgaagcagggcta-tctggaaattcat 1324
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6840
Number of Sequences: 1807
Number of extensions: 6840
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)