BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1522 0.0
>3x_Contig1250
Length = 5563
Score = 1522 bits (768), Expect = 0.0
Identities = 818/832 (98%), Gaps = 2/832 (0%)
Strand = Plus / Minus
Query: 89 cattgaaaaccaaccaagaaaagaatgacgagccgacattggaaaatgttaaggacatag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 cattgaaaaccaaccaagaaaagaatgacgagccgacattggaaaatgttaaggacatag 3768
Query: 149 aagagtttaaccgtgattatattatcgatttagacttgatcggttctttaaaatcgataa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3767 aagagtttaaccgtgattatattatcgatttagacttgatcggttctttaaaatcgataa 3708
Query: 209 aactatccacctttttttacaatcaagccataagaatcatatataatgtgacaagagata 268
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 aactatccacctcatcttacaatcaagccataagaatcatatataatgtgacaagagata 3648
Query: 269 aaacacagatatcagaatgtgtgaaacagggtgctggattgatgctcttggtatttttag 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3647 aaacacagatatcagaatgtgtgaaacagggtgctggattgatgctcttggtatttttag 3588
Query: 329 cacaaaaaaggaacctttctaaagatgaatggtatcttctatcgataagagcactatcga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3587 cacaaaaaaggaacctttctaaagatgaatggtatcttctatcgataagagcactatcga 3528
Query: 389 aaacactcatctatgtgaatccagagactgcgttcagcaaatattcaccgttgagcgcag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3527 aaacactcatctatgtgaatccagagactgcgttcagcaaatattcaccgttgagcgcag 3468
Query: 449 caccgttcttatttgaaaatttacctttaccaaatgacaacgctttatcggaacttcaat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3467 caccgttcttatttgaaaatttacctttaccaaatgacaacgctttatcggaacttcaat 3408
Query: 509 tcacacaattagatacttacgaagcattattagcgttgacaaatttggctactataaacc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3407 tcacacaattagatacttacgaagcattattagcgttgacaaatttggctactataaacc 3348
Query: 569 agggagtagatctcggcaaaatcatcttgagtaatgctcagtattgggatagtatagaga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 agggagtagatctcggcaaaatcatcttgagtaatgctcagtattgggatagtatagaga 3288
Query: 629 atctcttattggattcatcggtcagaattcaaagatcgacattagaacttatttccaatt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 atctcttattggattcatcggtcagaattcaaagatcgacattagaacttatttccaatt 3228
Query: 689 taatgtccaatccaatggctatctctgcaaagttcttctgctttgaaaaccctaagagtg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227 taatgtccaatccaatggctatctctgcaaagttcttctgctttgaaaaccctaagagtg 3168
Query: 749 cacagaatttcgaaatactggtcaagctttctcg-acttcacgatatacaatctcagaga 807
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 3167 cacagaatttcgaaatactggtcaagc-ttctcgaacttcacgatatacaatctcagaga 3109
Query: 808 gccgttgctgccatatttgccaatatttgcagcacccgttcgttcatttgtcaagaacta 867
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||
Sbjct: 3108 gccgttgctgccatatttgccaatattgcaagcaccgttccgttcatttgcaaagaacta 3049
Query: 868 tctgagaagcgaaaccttatcgaaacagcaattagagtctttaaaacacaaa 919
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3048 tctgagaagcgaaaccttatcgaaacagcaataagagtctttaaaacacaaa 2997
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6580
Number of Sequences: 1807
Number of extensions: 6580
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)