BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZH10RM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig374 1477 0.0 >3x_Contig374 Length = 1960 Score = 1477 bits (745), Expect = 0.0 Identities = 804/820 (98%), Gaps = 3/820 (0%) Strand = Plus / Plus Query: 69 aatatgcgaattttgcattt-aattcca-cgggtttggtgtccactgaacgaaagactag 126 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 794 aatatgcgaattttgcatttcaattccaacgggtttggtgtccactgaacgaaagactag 853 Query: 127 tgacattgaatgctataccaaacgaactactgaataacgaaaagttattcaattgcatag 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 854 tgacattgaatgctataccaaacgaactactgaataacgaaaagttattcaattgcatag 913 Query: 187 gccatgcgatccataatgtttttaagatcaaagatgtgatttttgattttgaagacgtag 246 |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct: 914 gccatgcgatccataaggaatggaagatcaaagatgtgatttttgattttgaagacgtag 973 Query: 247 accaccatttgcataaacggatcagtcttggagaactgaatccgtacgatttcaataaac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 accaccatttgcataaacggatcagtcttggagaactgaatccgtacgatttcaataaac 1033 Query: 307 ctttagttaacagagagcataaattacgtttgaagtcacaatctgtcgtaatgacaattg 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 ctttagttaacagagagcataaattacgtttgaagtcacaatctgtcgtaatgacaattg 1093 Query: 367 ataagttttgtaccgcaaagaccacagcaggtagtagtgcgaacagcaaatctatgaatg 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 ataagttttgtaccgcaaagaccacagcaggtagtagtgcgaacagcaaatctatgaatg 1153 Query: 427 cgttcatagcacgtaagagccaatcactaaacaacggatcaggcatcatgagtaaattgg 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 cgttcatagcacgtaagagccaatcactaaacaacggatcaggcatcatgagtaaattgg 1213 Query: 487 agacagcactaaagaggagaaaacttagcggtcctgccaacgaacactcgacgaagaaag 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 agacagcactaaagaggagaaaacttagcggtcctgccaacgaacactcgacgaagaaag 1273 Query: 547 ttgtaaatagtcaattcttcgctgctaagcgggaaccaaaagcggtgcctaaagtggagc 606 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1274 ttgtaaatagtcaattcttcgctgctaagggggaaccaaaagcggtgcctaaagtggagc 1333 Query: 607 caaagcctgaaccaggccttgcatattctgcagctttccactctgacacatttttctgat 666 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1334 caaagcctgaaccaggccttgcatattctgcagctttccactctgacaca-ttttctgat 1392 Query: 667 gtgatgttgttagactcggatgaagagtcggagactcagactggagagcagcagaaaaaa 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 gtgatgttgttagactcggatgaagagtcggagactcagactggagagcagcagaaaaaa 1452 Query: 727 gagccgtctcagaaactgagtcaggaagacgtcgagacagaagtacccagcagtctggta 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 gagccgtctcagaaactgagtcaggaagacgtcgagacagaagtacccagcagtctggta 1512 Query: 787 cccagctcttgaccagactcatcgtttcatgaaaaggagaagaaggacgctctgtcaatg 846 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1513 cccagctctgaaccagactcatcgttcaatgaaaaggagaagaaggacgctctgtcaatg 1572 Query: 847 gcagaagaagaatctgaagtctgnagcgaagtggaagaaa 886 |||||||||||||||||||||| |||||||| ||||||| Sbjct: 1573 gcagaagaagaatctgaagtcttgagcgaagttgaagaaa 1612 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6262 Number of Sequences: 1807 Number of extensions: 6262 Number of successful extensions: 41 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)