BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZH10RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig374                                                         1477   0.0  

>3x_Contig374 
          Length = 1960

 Score = 1477 bits (745), Expect = 0.0
 Identities = 804/820 (98%), Gaps = 3/820 (0%)
 Strand = Plus / Plus

                                                                        
Query: 69   aatatgcgaattttgcattt-aattcca-cgggtttggtgtccactgaacgaaagactag 126
            |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 794  aatatgcgaattttgcatttcaattccaacgggtttggtgtccactgaacgaaagactag 853

                                                                        
Query: 127  tgacattgaatgctataccaaacgaactactgaataacgaaaagttattcaattgcatag 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tgacattgaatgctataccaaacgaactactgaataacgaaaagttattcaattgcatag 913

                                                                        
Query: 187  gccatgcgatccataatgtttttaagatcaaagatgtgatttttgattttgaagacgtag 246
            |||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||||
Sbjct: 914  gccatgcgatccataaggaatggaagatcaaagatgtgatttttgattttgaagacgtag 973

                                                                        
Query: 247  accaccatttgcataaacggatcagtcttggagaactgaatccgtacgatttcaataaac 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  accaccatttgcataaacggatcagtcttggagaactgaatccgtacgatttcaataaac 1033

                                                                        
Query: 307  ctttagttaacagagagcataaattacgtttgaagtcacaatctgtcgtaatgacaattg 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ctttagttaacagagagcataaattacgtttgaagtcacaatctgtcgtaatgacaattg 1093

                                                                        
Query: 367  ataagttttgtaccgcaaagaccacagcaggtagtagtgcgaacagcaaatctatgaatg 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 ataagttttgtaccgcaaagaccacagcaggtagtagtgcgaacagcaaatctatgaatg 1153

                                                                        
Query: 427  cgttcatagcacgtaagagccaatcactaaacaacggatcaggcatcatgagtaaattgg 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 cgttcatagcacgtaagagccaatcactaaacaacggatcaggcatcatgagtaaattgg 1213

                                                                        
Query: 487  agacagcactaaagaggagaaaacttagcggtcctgccaacgaacactcgacgaagaaag 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 agacagcactaaagaggagaaaacttagcggtcctgccaacgaacactcgacgaagaaag 1273

                                                                        
Query: 547  ttgtaaatagtcaattcttcgctgctaagcgggaaccaaaagcggtgcctaaagtggagc 606
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1274 ttgtaaatagtcaattcttcgctgctaagggggaaccaaaagcggtgcctaaagtggagc 1333

                                                                        
Query: 607  caaagcctgaaccaggccttgcatattctgcagctttccactctgacacatttttctgat 666
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1334 caaagcctgaaccaggccttgcatattctgcagctttccactctgacaca-ttttctgat 1392

                                                                        
Query: 667  gtgatgttgttagactcggatgaagagtcggagactcagactggagagcagcagaaaaaa 726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 gtgatgttgttagactcggatgaagagtcggagactcagactggagagcagcagaaaaaa 1452

                                                                        
Query: 727  gagccgtctcagaaactgagtcaggaagacgtcgagacagaagtacccagcagtctggta 786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 gagccgtctcagaaactgagtcaggaagacgtcgagacagaagtacccagcagtctggta 1512

                                                                        
Query: 787  cccagctcttgaccagactcatcgtttcatgaaaaggagaagaaggacgctctgtcaatg 846
            |||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 1513 cccagctctgaaccagactcatcgttcaatgaaaaggagaagaaggacgctctgtcaatg 1572

                                                    
Query: 847  gcagaagaagaatctgaagtctgnagcgaagtggaagaaa 886
            ||||||||||||||||||||||  |||||||| |||||||
Sbjct: 1573 gcagaagaagaatctgaagtcttgagcgaagttgaagaaa 1612


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6262
Number of Sequences: 1807
Number of extensions: 6262
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)