BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH11FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1409 0.0
>3x_Contig1604
Length = 15703
Score = 1409 bits (711), Expect = 0.0
Identities = 795/811 (98%), Gaps = 9/811 (1%)
Strand = Plus / Minus
Query: 88 taatttcttttcca-tggtggcgtgccagcttcttctcgctcttgttttggttttagaac 146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11124 taatttcttttccaatggtggcgtgccagcttcttctcgctcttgttttggttttagaac 11065
Query: 147 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 11005
Query: 207 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11004 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 10945
Query: 267 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10944 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 10885
Query: 327 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10884 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 10825
Query: 387 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10824 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 10765
Query: 447 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10764 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 10705
Query: 507 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10704 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 10645
Query: 567 tgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagagagga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10644 tgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagagagga 10585
Query: 627 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgtacta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10584 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgtacta 10525
Query: 687 tataatcgaaatgtatagtttttatagtttagcagaagaagttttccatctttagaaacc 746
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 10524 tataatcgaaatgtatagtttttatagtttagcagaggaagttttccatcttaagaaacc 10465
Query: 747 atctggggtttggaacacanttttctgtcaattaataaaacctaccaagtagtctacgcc 806
|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 10464 atct-gggtttggaacaca-ttttctgtcaa-taataaaacctaccaagtagtctacg-c 10409
Query: 807 cgttcttactcttcgtggcgggggttcaattgttgggaggaatttgacagcttccttttt 866
|| |||||||||||||||| |||||||||||||| ||| |||||||||||||||| || |
Sbjct: 10408 cggtcttactcttcgtggc-ggggttcaattgtt-ggaagaatttgacagcttcc-ttct 10352
Query: 867 tattaactgcagtttggtctttcatggttgt 897
|| |||||||||||| ||||| |||||||||
Sbjct: 10351 tagtaactgcagttt-gtcttccatggttgt 10322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7483
Number of Sequences: 1807
Number of extensions: 7483
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)