BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH11RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1520 0.0
>3x_Contig1590
Length = 13653
Score = 1520 bits (767), Expect = 0.0
Identities = 864/885 (97%), Gaps = 10/885 (1%)
Strand = Plus / Minus
Query: 44 cttatagcgatcaatccgagtgtttattagcgtgggtagtaccagtggataaatttagta 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3803 cttatagcgatcaatccgagtgtctattagcgtgggtagtaccagtggataaatttagta 3744
Query: 104 tcgcatagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaact 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 tcgcatagaatgaacatgttcaggcaggctgtacgtagtttcgtgaggtaccaatcaact 3684
Query: 164 acatcattaaatcctaaaattcttccattcaatgccaaggagactccaatccctttttgt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3683 acatcattaaatcctaaaattcttccattcaatgccaaggagactccaatcccaaaatgt 3624
Query: 224 gtggaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 gtggaagctgtgtaccatgcaccattgaagatcgaaccaacacaccgtgatttgatagct 3564
Query: 284 gatatccaattacgttcatatgataatgaaaatctagactttttctccagttttgttcta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 gatatccaattacgttcatatgataatgaaaatctagactttttctccagttttgttcta 3504
Query: 344 agagctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 agagctggttattatttaggaattccaatgaaagggccaaaaccactaccaacaaagaga 3444
Query: 404 aaacgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 aaacgttggactgttatcagagctccattcgtgatggctaagtcgaaggagaactttgaa 3384
Query: 464 agacatacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 agacatacacatgctaggttaatccgtctatacgattgtaacaccgaattggtagaaact 3324
Query: 524 ttattatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 ttattatcatatatttccaagcacggtatcagtggtgttggtatcaaatgtaacttatat 3264
Query: 584 caaagagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 caaagagaacctatagatttggacagtaaaaaagacggcccggagttggagaatattgat 3204
Query: 644 atctcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 atctcgtcccaacttcaaggtctggatgacgttgttggtgctaaggttgttgaattattg 3144
Query: 704 aacaatccagaattcaaaaaacatttgcaataaaattccagtccgaacgactgggcacc- 762
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3143 aacaatccagaattcaaaaaacatttgcaataaaattccagtccgaacgact-ggcaccg 3085
Query: 763 gtccagcanaac-acatgcacatatctataatttcg-aggcctgtatatataccac-ata 819
|||||||| ||| ||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct: 3084 gtccagcaaaacaacatgcacatatctataatttcgaaggcctgtatatatacaacaata 3025
Query: 820 a--tattcaacgagacgta-ccaaatctctatcacatatattatgtatcgatttatccgt 876
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 aataattcaacgagacgtacccaaatctctatcacatatattatgtatcgatttatccgt 2965
Query: 877 acatattgaaaaccttctc-agttcacatttgaaatgtgtcaatt 920
||||||||||| ||| ||| |||||||| |||| |||||||||||
Sbjct: 2964 acatattgaaatcctcctcaagttcaca-ttgagatgtgtcaatt 2921
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6939
Number of Sequences: 1807
Number of extensions: 6939
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)