BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH12FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1191 0.0
>3x_Contig1444
Length = 7580
Score = 1191 bits (601), Expect = 0.0
Identities = 688/708 (97%), Gaps = 8/708 (1%)
Strand = Plus / Minus
Query: 86 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 3784
Query: 146 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 3724
Query: 206 aatcgaatgagattattttgacagtgttagaacatggactttggtttatgaattatctaa 265
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 aatcgaatgagattagtttgacagtgttagaacatggactttggtttatgaattatctaa 3664
Query: 266 ggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggttattaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 ggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggttattaa 3604
Query: 326 atgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaattgga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 atgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaattgga 3544
Query: 386 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 3484
Query: 446 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 3424
Query: 506 tgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatcttgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 tgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatcttgtc 3364
Query: 566 tttctttacatctgtggcacgaaattgattacaatatgacaaaaaagaattaacaaagat 625
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 3363 tttctttacatctgtggcacgaaattgataacaatatgacaaaaaagaataaacaaagat 3304
Query: 626 tggaccgacagaaaagggaaaatctttgttattttttaactctgacaccttctcattcaa 685
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct: 3303 aggaccgacagaaaagggaaaatctttgtta-ttggtaactctgacaccttctcatccaa 3245
Query: 686 acttacatttttggcttcgtttgtcaactaccccccttgtgttttaatcaggtaatggaa 745
||||||||||| | |||||||||||||| |||||||||| ||||||||||| |||| |
Sbjct: 3244 acttacatttt--gtctcgtttgtcaacta-cccccttgtg-tttaatcaggt-atgg-a 3191
Query: 746 aggagtgacgttgaccacaccataaattattcagacgctttgactttt 793
||||||||||||||||||| ||| |||||| |||||||| ||||||||
Sbjct: 3190 aggagtgacgttgaccaca-catgaattatgcagacgctgtgactttt 3144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8911
Number of Sequences: 1807
Number of extensions: 8911
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)