BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZH12RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1170 0.0
>3x_Contig1659
Length = 17570
Score = 1170 bits (590), Expect = 0.0
Identities = 689/717 (96%), Gaps = 4/717 (0%)
Strand = Plus / Plus
Query: 44 gcttgaaggcaactttttgataattttatcacagcattggaaagcgcagtcttgaagaaa 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6488 gcttgaaggcaactttttgataaagatatcacagcattggaaagcgcagtcttgaagaaa 6547
Query: 104 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 6607
Query: 164 ggaaattttttttagatcgccagttggaacagtttgtaaatatttattatttaaagtan- 222
||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 6608 ggaaaatagctttagatcgccagttggaacagtttgtaaatatttattattcaaattaat 6667
Query: 223 gtcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 282
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6668 ggcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 6727
Query: 283 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6728 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 6787
Query: 343 agctaagaacatgattttcgtggttgaaatagttcttgttgcgataacattcgaggaaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6788 agctaagaacatgattttcgtggttgaaatagttcttgttgcgataacattcgaggaaag 6847
Query: 403 gatatgttgaattgaagacttttgggccttaacgttatgattagatgaaccacgacgtaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6848 gatatgttgaattgaagacttttgggccttaacgttatgattagatgaaccacgacgtaa 6907
Query: 463 aatagtattcatttccaatgtggtttccttattgtttgaagggaaatccgatacgagagg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6908 aatagtattcatttccaatgtggtttccttattgtttgaagggaaatccgatacgagagg 6967
Query: 523 aggggagttatatgcaataatctctagttcccttctgaacttcaatgccatatcagattt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6968 aggggagttatatgcaataatctctagttcccttctgaacttcaatgccatatcagattt 7027
Query: 583 gatatggaacccatgaataaccatgttgaaccaaatattacggaaagcggaagttg-tac 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7028 gatatggaacccatgaataaccatgttgaaccaaatattacggaaagcggaagttgttac 7087
Query: 642 agcatcttttcccaagatatctttgatagacacatctttaccatgaacttggtacagtaa 701
|||||||||||||||||||||| ||||||||||||||| |||| ||||| | |||||||
Sbjct: 7088 agcatcttttcccaagatatctctgatagacacatcttcaccaggaactggtaacagtaa 7147
Query: 702 tgccaatgggtttcagattaagggcgatttgtacggcgaacttgggaaatttcatgg 758
||||||| ||||||| || |||||||||| |||||| ||| |||||||||||||
Sbjct: 7148 tgccaat-ggtttcaagaaaaaggcgatttgttcggcgacctt-ggaaatttcatgg 7202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7837
Number of Sequences: 1807
Number of extensions: 7837
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)