BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA01FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1608 0.0
>3x_Contig1457
Length = 7441
Score = 1608 bits (811), Expect = 0.0
Identities = 822/825 (99%), Gaps = 1/825 (0%)
Strand = Plus / Plus
Query: 82 tgaacaaccgttgtagtttcttccgtagtagtgaagttcgcaaaggccaaccctctaaac 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaacaaccgttgtagtttcttccgtagtagtgaagttcgcaaaggccaaccctctaaac 626
Query: 142 acaccgttatcaaaatggtagttgaaagcataaggcagtggtagatccatcttggcgata 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acaccgttatcaaaatggtagttgaaagcataaggcagtggtagatccatcttggcgata 686
Query: 202 acttccaaaagttgttccttcttgatggcaaaagggatgtttttaatcacaatagcggta 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acttccaaaagttgttccttcttgatggcaaaagggatgtttttaatcacaatagcggta 746
Query: 262 gggataagttcttcagcaatattggcagaaacattatttgaatttggagaagagttggag 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gggataagttcttcagcaatattggcagaaacattatttgaatttggagaagagttggag 806
Query: 322 aactcctcattctctacgctggaatcttgaatctgatcgtctgacattagctaaatgaat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aactcctcattctctacgctggaatcttgaatctgatcgtctgacattagctaaatgaat 866
Query: 382 cgtatagttctttgagtaaaattgttctaaaaccgcagagtcagttaacgggaaacggta 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 cgtatagttctttgagtaaaattgttctaaaaccgcagagtcagttaacgggaaacggta 926
Query: 442 aatcgtaagaatgcaagttatgcacacagcacaggccttaaagaaggtattagatgggac 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 aatcgtaagaatgcaagttatgcacacagcacaggccttaaagaaggtattagatgggac 986
Query: 502 gacaaaaaaattgatatgcgtttcgtagctcttaaaaaaccgatgaacagcaggtgcaac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gacaaaaaaattgatatgcgtttcgtagctcttaaaaaaccgatgaacagcaggtgcaac 1046
Query: 562 acgtctattttagaaacaaatgcttattgtaatgtctcactttttcctgataaaagcggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 acgtctattttagaaacaaatgcttattgtaatgtctcactttttcctgataaaagcggg 1106
Query: 622 aaatttacctgaaaaactgaatctttccactgatataagtaaaaagtcaatacttgtaat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 aaatttacctgaaaaactgaatctttccactgatataagtaaaaagtcaatacttgtaat 1166
Query: 682 acttgtacgcaaaattttacttccagatagttctgatatcagctgttaaggactcagcct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 acttgtacgcaaaattttacttccagatagttctgatatcagctgttaaggactcagcct 1226
Query: 742 ttcgaccccctttgttcagttctcgcaaaacaaaaaacatatantcgngttntctcattt 801
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct: 1227 ttcgaccccctttgttcagttctcgcaaaacaaaaaacatata-tcgtgttttctcattt 1285
Query: 802 ttaaaacttttcttaaaatttctttctgcctagaaactgcaaaatttgaaaaagctgcca 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 ttaaaacttttcttaaaatttctttctgcctagaaactgcaaaatttgaaaaagctgcca 1345
Query: 862 gtactgggtttacatcgaataagattggtgggaggtgacacattt 906
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 gtactgggtttacatcgaataagattggtgggaggtgacacattt 1390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6602
Number of Sequences: 1807
Number of extensions: 6602
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)