BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZA01RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig782                                                         1681   0.0  

>3x_Contig782 
          Length = 2529

 Score = 1681 bits (848), Expect = 0.0
 Identities = 850/851 (99%)
 Strand = Plus / Minus

                                                                        
Query: 49   acagaatgcataaggaagctttattcgtggcatgtttcattgccgatgatgctatcgcca 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2201 acagaatgcataaggaagctttattcgtggcatgtttcattgccgatgatgctatcgcca 2142

                                                                        
Query: 109  agaataccatagatttgttgctaagctcagaaattttgtatttcacctccaatgatatta 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2141 agaataccatagatttgttgctaagctcagaaattttgtatttcacctccaatgatatta 2082

                                                                        
Query: 169  aaccaattttggaaagattacagatttcagctccaataatccatcgtcatctggcactat 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2081 aaccaattttggaaagattacagatttcagctccaataatccatcgtcatctggcactat 2022

                                                                        
Query: 229  acgagaagtactctggcgaccatctttccgaagtaagtaatttgttgaaagcaggcgact 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2021 acgagaagtactctggcgaccatctttccgaagtaagtaatttgttgaaagcaggcgact 1962

                                                                        
Query: 289  ttaaggaggcggaactagtcaccattactaccgtaggtccaaagttaataatcaatgcca 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1961 ttaaggaggcggaactagtcaccattactaccgtaggtccaaagttaataatcaatgcca 1902

                                                                        
Query: 349  aatggaataacgattacttatcagttttggaaacactgttgcaaaggtttccttcgcaca 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 aatggaataacgattacttatcagttttggaaacactgttgcaaaggtttccttcgcaca 1842

                                                                        
Query: 409  ccatcccaacttgggaaaaaggattgggtgtatatgaaaagtacatcaagctctcactac 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 ccatcccaacttgggaaaaaggattgggtgtatatgaaaagtacatcaagctctcactac 1782

                                                                        
Query: 469  acaactccctcgatcctaatatcatccatcagcttatcaacacattacccaacctatgca 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 acaactccctcgatcctaatatcatccatcagcttatcaacacattacccaacctatgca 1722

                                                                        
Query: 529  aagactattcacatcatgaattagtgaacgttgcaagctctcgtatctctgaggctgtca 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 aagactattcacatcatgaattagtgaacgttgcaagctctcgtatctctgaggctgtca 1662

                                                                        
Query: 589  gtgaattgtttttgatcaacctcaacatgttatcaagaaaaatcccaaaagagagcctgc 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 gtgaattgtttttgatcaacctcaacatgttatcaagaaaaatcccaaaagagagcctgc 1602

                                                                        
Query: 649  tttctttaccattaggtcaaccggaatcaaattacttaaagaaagtgttgtcctcattgt 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 tttctttaccattaggtcaaccggaatcaaattacttaaagaaagtgttgtcctcattgt 1542

                                                                        
Query: 709  gaaaacctgtattataagtatataaatgattacaacaaaatattaaacgataaaagtaca 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 gaaaacctgtattataagtatataaatgattacaacaaaatattaaacgataaaagtaca 1482

                                                                        
Query: 769  taatatagaaggatatcatgaaagttcagaacccatttcaagaacttttcggatgcaaat 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 taatatagaaggatatcatgaaagttcagaacccatttcaagaacttttcggatgcaaat 1422

                                                                        
Query: 829  tagtattattctttgactttagacatcgnctaccgcgtcgcgtaacgattcaatgacctc 888
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1421 tagtattattctttgactttagacatcgcctaccgcgtcgcgtaacgattcaatgacctc 1362

                       
Query: 889  gagtatcgcgg 899
            |||||||||||
Sbjct: 1361 gagtatcgcgg 1351


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6676
Number of Sequences: 1807
Number of extensions: 6676
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)