BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1398 0.0
>3x_Contig1199
Length = 6044
Score = 1398 bits (705), Expect = 0.0
Identities = 761/772 (98%), Gaps = 6/772 (0%)
Strand = Plus / Minus
Query: 176 accgtctggatcgtgaactaaatgcgaagttaaaggagttat-gataagtattgatgaat 234
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 6030 accgtctggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaat 5971
Query: 235 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 5911
Query: 295 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 5851
Query: 355 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 5791
Query: 415 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 5731
Query: 475 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 5671
Query: 535 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 5611
Query: 595 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 5551
Query: 655 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 5491
Query: 715 accgttactctcaacttcgacaacaacatgaatcttcattgcagcatcttttggatgacg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5490 accgttactctcaacttcgacaacaacatgaatcttcattgcagcatcttttggatgacg 5431
Query: 775 aagtacgacaaagaaactcttggtacaaagatttcc-atggataactcgatttctagatg 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5430 aagtacgacaaagaaactcttggtacaaagatttccaatggataactcgatttctagatg 5371
Query: 834 ntgatagtttgctaccatcatcagtatacatttcgtccataagtgaatcat-aacaggtg 892
||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 5370 ttgatagtttgctaccatcatcagtatacattccgtccataagtg-atcataaacaggtg 5312
Query: 893 acattgtctcagatt-aagattata-taatcaacttgcttcattggacttag 942
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 5311 acattgtctcagattaaagattatattaatcaacttgcttcattgaacttag 5260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8101
Number of Sequences: 1807
Number of extensions: 8101
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)