BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA04RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1631 1637 0.0
>3x_Contig1631
Length = 12284
Score = 1637 bits (826), Expect = 0.0
Identities = 857/864 (99%), Gaps = 3/864 (0%)
Strand = Plus / Minus
Query: 50 acgtgccatatcgtaggtattttcctcattatcttcttctacatcattcgaattttgcca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 acgtgccatatcgtaggtattttcctcattatcttcttctacatcattcgaattttgcca 2861
Query: 110 ttcgattgcttggtcatcatcgatggaaacttcagtcatcatgacaagggtatcaagtac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 ttcgattgcttggtcatcatcgatggaaacttcagtcatcatgacaagggtatcaagtac 2801
Query: 170 cactgattgggcgtaattttgattatttttacacatctgaggggcgcattcactgaagac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 cactgattgggcgtaattttgattatttttacacatctgaggggcgcattcactgaagac 2741
Query: 230 agttaacaactccaaagcagtcgttctggcactcggttctaaatctttattcttgatgac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 agttaacaactccaaagcagtcgttctggcactcggttctaaatctttattcttgatgac 2681
Query: 290 catatctgcaaattggataatttgatcgaacatatctttgaagagtttaggagccaactc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 catatctgcaaattggataatttgatcgaacatatctttgaagagtttaggagccaactc 2621
Query: 350 aactaattcgatcaatgattcgaatacggcggccaaggcctcatctttactgtcatccaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 aactaattcgatcaatgattcgaatacggcggccaaggcctcatctttactgtcatccaa 2561
Query: 410 aaactttggcaaactgttcaaaagacttggtaatagaacacctagtttggcccagttatt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 aaactttggcaaactgttcaaaagacttggtaatagaacacctagtttggcccagttatt 2501
Query: 470 ctttggaagctgtttgaagtacccaacaaacgctgtaacagctgcaatcttgacttcatc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 ctttggaagctgtttgaagtacccaacaaacgctgtaacagctgcaatcttgacttcatc 2441
Query: 530 gctaggatccgtgaatccactctcaaagataggcaaagcatggttgatgtcaatggaatt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2440 gctaggatccgtgaatccactctcaaagataggcaaagcatggttgatgtcaatggaatt 2381
Query: 590 gattagatgaggcatacttgagaaaattctgaaactagattctctgaaatttggatctgt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2380 gattagatgaggcatacttgagaaaattctgaaactagattctctgaaatttggatctgt 2321
Query: 650 gtttttgatagcttcgaataacgtttggagtaacggaggccactcaggtaattcttctaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2320 gtttttgatagcttcgaataacgtttggagtaacggaggccactcaggtaattcttctaa 2261
Query: 710 cgcacattctgcaattgcatcagataatttgtgtctaatattgttgggtctttgggagat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2260 cgcacattctgcaattgcatcagataatttgtgtctaatattgttgggtctttgggagat 2201
Query: 770 aaaacccttcaaaagtgtatctctaatttgcttcaaggcttccttcgaaatatgggtaat 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 aaaacccttcaaaagtgtatctctaatttgcttcaaggcttccttcgaaatatgggtaat 2141
Query: 830 atttttgggcatgattatagtcttagatgaaggtggcgctctc-aagctagcttacngna 888
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 2140 atttttggcaatgattatagtcttagatgaaggtggcgctctcaaagctagcttacggaa 2081
Query: 889 c-aaactgcagac-aacctgcagt 910
| ||||||||||| ||||||||||
Sbjct: 2080 caaaactgcagacaaacctgcagt 2057
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6585
Number of Sequences: 1807
Number of extensions: 6585
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)