BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1272 1691 0.0
>3x_Contig1272
Length = 8315
Score = 1691 bits (853), Expect = 0.0
Identities = 870/875 (99%), Gaps = 1/875 (0%)
Strand = Plus / Plus
Query: 46 taaaggaaaaaaagcgacaagtgaacccatctggaagtgaaatggcagttgatgatgccc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 taaaggaaaaaaagcgacaagtgaacccatctggaagtgaaatggcagttgatgatgccc 221
Query: 106 aaaattcatctgaagatgatgaaatacttaatgaagaatactcagccgatgatatggatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aaaattcatctgaagatgatgaaatacttaatgaagaatactcagccgatgatatggatg 281
Query: 166 atgatgaagagtgcgacagtggtttggaagaaatgagtgtagaagaaacattggcagctt 225
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 atgatgaagagtgcgacagtggtttggaagaaatgagtgtagaagaaacaatggcagctt 341
Query: 226 tgaaggcaatgaaagataaaaagttacaagccaagtcttccaaatctaccaccactggta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgaaggcaatgaaagataaaaagttacaagccaagtcttccaaatctaccaccactggta 401
Query: 286 ctgtagagaaaggctctaataagaataacaaagagtctggaaagaaagaacagtctaaat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctgtagagaaaggctctaataagaataacaaagagtctggaaagaaagaacagtctaaat 461
Query: 346 caaagtctgagatttacagtccattaacaccagaggacagagcagcgattgaaagagatg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caaagtctgagatttacagtccattaacaccagaggacagagcagcgattgaaagagatg 521
Query: 406 aactggatatgaaatattatgctggcaagttgggcttgaaaaacggtaaaaaattgcgtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aactggatatgaaatattatgctggcaagttgggcttgaaaaacggtaaaaaattgcgtg 581
Query: 466 ccacagatgaatacgatgctattggaggtttactagagggtcttgagtattttgaagact 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccacagatgaatacgatgctattggaggtttactagagggtcttgagtattttgaagact 641
Query: 526 ttggagatgatgaaagtggagaggaaaatgtagaagatgatagcaatgtctcagacgatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttggagatgatgaaagtggagaggaaaatgtagaagatgatagcaatgtctcagacgatg 701
Query: 586 gtgaagatgaactaatatcggaagatgatgaagatgaagatgaacaaacggaagagggac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtgaagatgaactaatatcggaagatgatgaagatgaagatgaacaaacggaagagggac 761
Query: 646 aaatcgaaaacccattttcgtctgatgatgagttatcaagtggagactttgatgaattcg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaatcgaaaacccattttcgtctgatgatgagttatcaagtggagactttgatgaattcg 821
Query: 706 acgaagacgacttggatgaagatgaatggcaacaacttcatgaattagaggggaacgctc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acgaagacgacttggatgaagatgaatggcaacaacttcatgaattagaggggaacgctc 881
Query: 766 catcatctacacgcacgaagcanaaggagaacatttacgccgccccagtcatcgaagaga 825
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 882 catcatctacacgcacgaagcaaaaggagaacatttacgccgccccagtcatcgaagaga 941
Query: 826 ataaatcttacgtaccaccatccttgagaagaaaacaacttgaggaatctgactcgnaga 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 942 ataaatcttacgtaccaccatccttgagaagaaaacaacttgaggaatctgactcggaga 1001
Query: 886 ctaacagggaattgaaaag-aaagttaaatcagct 919
|||||| |||||||||||| |||||||||||||||
Sbjct: 1002 ctaacaaggaattgaaaagaaaagttaaatcagct 1036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,049
Number of Sequences: 1807
Number of extensions: 10049
Number of successful extensions: 166
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)