BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA06FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1554 0.0
>3x_Contig1416
Length = 10161
Score = 1554 bits (784), Expect = 0.0
Identities = 844/861 (98%), Gaps = 4/861 (0%)
Strand = Plus / Minus
Query: 83 ctgctttctggagtccttcacacacttagcatgaacaggaatcaacccatgaagagataa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8791 ctgctttctggagtccttcacacacttagcatgaacaggaatcaacccatgaagagataa 8732
Query: 143 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8731 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 8672
Query: 203 ggcatcgcttggatttttgatacaatgtggtttgaaacgttctaattggttttcgaattc 262
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 ggcatcgcttggacatgggatacaatgtggtttgaaacgttctaattggttttcgaattc 8612
Query: 263 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 8552
Query: 323 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 8492
Query: 383 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 8432
Query: 443 tatcgaagagatgttagtttcttgagtaggtatttcgtctgttttattcttagcggcctc 502
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8431 tatcgaagagatgttagtttcttgagtaggtatttcgtctgtattattcttagcggcctc 8372
Query: 503 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 8312
Query: 563 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 8252
Query: 623 ctcgctttcttcatccttggcaaaagtttctgcttttgtaatagtggtatcgctctcttc 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 ctcgctttcttcatccttggcaaaagtttctgcttttgtaatagtggtatcgctctcttc 8192
Query: 683 cccggtttcagtaataatagattggttcacttgttcctgcaatttttttacttctcttaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 cccggtttcagtaataatagattggttcacttgttcctgcaatttttttacttctcttaa 8132
Query: 743 agttggcagttcagtcgctggaacttccggcagttctttcttgactgactcttgttctac 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8131 agttggcagttcagtcgctggaacttccggcagttctttcttgactgactcttgttctac 8072
Query: 803 tttttgc-aggttttggctggtttggaatcctcaacctttttcttgat--gtgttnactc 859
||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 8071 tttttgcaaggttttggctggtttggaatcctcaacctttttcttgattggtgtggactc 8012
Query: 860 actagtagatgggttcagggacgaatctgtcactgatggaatttcggctctagnctttaa 919
||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 8011 actagtagatgggttcaaggacgaatctgtcactgatgggaattcggctctagtctttaa 7952
Query: 920 -gattgctccgttgggatatc 939
|||||||| ||||||||||
Sbjct: 7951 tgattgctcgtttgggatatc 7931
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6394
Number of Sequences: 1807
Number of extensions: 6394
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)