BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZA06RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1614 0.0
>3x_Contig1261
Length = 9103
Score = 1614 bits (814), Expect = 0.0
Identities = 892/910 (98%), Gaps = 6/910 (0%)
Strand = Plus / Minus
Query: 48 cttcaaagactgaaaagtaaccaatgtggatcagcatcagtttctgctattctggaagga 107
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8166 cttcaaagactgaaaagtaaccaaagtggatcagcatcagtttctgctattctggaagga 8107
Query: 108 tcgcctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8106 tcgcctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagca 8047
Query: 168 ttagtctctaatgaagctgtcacaaccaacactgacggatcaacaactccatttttg-ca 226
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 8046 ttagtctctaatgaagctgtcacaaccaacactgacggatcaacaactccaagttcgaca 7987
Query: 227 aattcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7986 aattcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaa 7927
Query: 287 attggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7926 attggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaac 7867
Query: 347 agactaattgaacacggtgagtttgagactataatttttggcgataaagttatattggat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7866 agactaattgaacacggtgagtttgagactataatttttggcgataaagttatattggat 7807
Query: 407 gaaagcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7806 gaaagcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttc 7747
Query: 467 cctctagaaaaggctatcaaatatgtcaagttaagaaaaccatatatcattaatgatttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7746 cctctagaaaaggctatcaaatatgtcaagttaagaaaaccatatatcattaatgatttg 7687
Query: 527 attatgcaaaaagtattgtgggatagaaggttgtgtctcaggttgctggcggcaagcaac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7686 attatgcaaaaagtattgtgggatagaaggttgtgtctcaggttgctggcggcaagcaac 7627
Query: 587 gtacctacccctcctagattggaaattacaagagatggtggtcccaaaattgatgatgaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7626 gtacctacccctcctagattggaaattacaagagatggtggtcccaaaattgatgatgaa 7567
Query: 647 ctgaaatctatgcttgccgaacgtggagttattgtttcaactgttcaagaacccaactgg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7566 ctgaaatctatgcttgccgaacgtggagttattgtttcaactgttcaagaacccaactgg 7507
Query: 707 agaatggtggacgatgacaccttggaagttgagggtaaggtgatgaccaaaccattcgtt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7506 agaatggtggacgatgacaccttggaagttgagggtaaggtgatgaccaaaccattcgtt 7447
Query: 767 gaaaaacctgtggatggtgaagatcacaatatatacatctattatcatttcgaaaacgga 826
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7446 gaaaaacctgtggatggtgaagatcacaatatatacatctattatcattcgaaaaacgga 7387
Query: 827 ggcgttgggcgtagaatattcagaaaggtc-gtaataaatctttcg-atttgaccctact 884
|||| |||||||||| |||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 7386 ggcggtgggcgtagattattcagaaaggtcggtaataaatcttccgaatttgaccctact 7327
Query: 885 ttgattc-acctcgtactgaaagttcatacctctacg-aaaattcatggataccgataa- 941
||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 7326 ttgattcaacctcgtactgaaggttcatacatctacgaaaaattcatggataccgataat 7267
Query: 942 ttcgaagatg 951
||||||||||
Sbjct: 7266 ttcgaagatg 7257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7238
Number of Sequences: 1807
Number of extensions: 7238
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)